3 genomes BUD2432 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0570 - Hbo3110 Hmu1330 - - - -

Pairwise sequence scores
Consensus score	2967	Hbo3110	Hmu1330	rrnAC0570
2445	Hbo3110	3182	2013	1932
2450	Hmu1330	2013	2960	2031
2351	rrnAC0570	1932	2031	2762

427 symbols
consensus       ------------VHLAVIALLAAYPAIYALLTNSPLGQEAAMLLPRVETMVAVLYFGLFA
#oth            1111111111111212122221211221221121121222221..11...11.1..1...
Hbo3110         VAWPVQYLRDHA:::::::FF::::GV::V:::::V:::M:Y::::::::I::F::::::
Hmu1330         :::::::::::::Y:V:VG:::C:::::H:::H::::EV:VTV:::M:::::::::S:::
rrnAC0570       ::::::::::::-----------------------------::::T:::::G::::::::

consensus       MSFDFISGYTGYLSFGHAAFYGTGAYTVILIANGKIPLLGPDTPFLAALVVGGLIALVLA
#oth            1.................1...1...1.2.11...2.11112...222.11.122.21..
Hbo3110         ::::::::::::::::::::::A:::L:V:AS:::::FVPV::::V:L::L::FV::A::
Hmu1330         ::::::::::::::::::::::::::::L::::::V:::::E::::V:::::AVL:T:::
rrnAC0570       I:::::::::::::::::V::::::::::::::::L:::::G:::MLS:L::::::V:::

consensus       VIIGLVSFRLTGVYFAMITLGFAQVLYVFVRDWDYVGSNPRDGIAV-LSRAAGFNIGVPG
#oth            121.1.....1...........1..1...1.1....11.....1.11112121.21...1
Hbo3110         ::::V:::::::::::::::::S::::::I::::::::::::::::::E:T:P:::::::
Hmu1330         :V:::::::::::::::::::::::::::::::::::::::::::-:::G:R::EL:::Y
rrnAC0570       MLV:::::::S::::::::::::::F:::::G::::AT:::::P::GP:H:E::Q:::::

consensus       VDQLNLSIGQLTGDEV-ALLGH-TLSGTEVSYYMVGLVVLACYFAMQRIIHSPFGRVMIA
#oth            1.1.2111.2.1.1211111.21.11211..1.11.1..12.11.1...2.......12.
Hbo3110         ::A:::A::::A:ES:EGF::FL:F:PA:::::::::::AG::::L:::V:::::::L::
Hmu1330         ::::TV:L:T::::TL:::A:::::GT:T::F:A::V:::L:FA:::::L::::::::V:
rrnAC0570       I:::S::::V:::::::::::S::::::::::::I:::::::::::::::::::::::L:

consensus       IRENEERARAIGYDTFRYKLGAFAISGFFAGVAGGLFAGFKRSVTPENSFYFLVAGDALL
#oth            .....1..2.1..1.11.......1.1..11.....1...1..11..11....12.....
Hbo3110         ::::::::::V:::::::::::::L:A:::::::::::::R:::::::::::::::::::
Hmu1330         :::::D::E::::::::::::::::::::G::::::L::::::::::SG::::TS:::::
rrnAC0570       ::::::::V::::N:YL:::::::::::::A::::::::::::AS:::::::::T:::::

consensus       ASIIGGFGTLAGPLFGHLFDETVREFLSKAGQGGGLLPYLRATLGEETLDTELVGGLTVN
#oth            .1.......1..1.2.1.....1.....12.1......11221.1111.212.1111.12
Hbo3110         :A:::::::I::::::R:::::I::::::G:E::::::FIDD::::A::S:V:YD:::::
Hmu1330         ::::::::::::::W:::::::::::::NR::::::::::EQ::S::F:T:::::::::E
rrnAC0570       ::::::::::::S:Y:::::::::::::::::::::::::::L::Q::::AT:::ET:IG

consensus       GAIDAALNGHASLYVGIVFVLFVLYVPDGLLGTLRARLGGTVARRLPARA----------
#oth            12.122.....1..1............1.11..1.2.1..11.21..1121111111111
Hbo3110         R:::TF:::::A::L::::::::::::N:::::::D:::::::D::::::VHLVRARTVD
Hmu1330         :F:T:::::::::::::::::::::::::IV::V:S::::R::::::E:L::::::::::
rrnAC0570       :L::LL:::::::::::::::::::::::::::::::V:::F:EA:::KV::::::::::

consensus       -WGERDD
#oth            1111212
Hbo3110         QSTSD::
Hmu1330         :::::--
rrnAC0570       ::::S:Q