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3 genomes BUD2433 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC2045

-

Hbo1859

Hmu0123

- - - -

Pairwise sequence scores
Consensus score1354 rrnAC2045 Hmu0123 Hbo1859
884rrnAC2045 1630 589 314
920Hmu0123 589 1401 360
611Hbo1859 314 360 1304

215 symbols
consensus       ---RRGIA---GDGPAD--------------------DSGPLGRDDD------RRGARPQ
#oth            11121122111221.111111111111111111111112112221111111112212211
rrnAC2045       MCL:::::LAEP::::ELARRTLLRMPTDMLTMRRIY:::A:H:::EEPQAPTE:::Q::
Hmu0123         :::M::LL::::G::P::::::::::::::::::::::VD:FTP:::::::::DDEY:::
Hbo1859         :::-----:::-MS:::::::::::::::::::::::--::T:KRE::::::::H:F--D

consensus       AARSINGDALSRLLVPRAIRRRAISLSIETPQAEYAAGEAVPFRVTMQNALPIPITLHTR
#oth            211.22221112211.21112112.111111122.22.221112.112.1..2.1112.2
rrnAC2045       :::::D:Q:W:D::I:TWL:Y::V:VD::V::TS:P::TE:::V::::::::V::::P:E
Hmu0123         S:::V:SGL:::W::::::::W:::::::::::::EL:S:I::::::K:::::::::T::
Hbo1859         DTK:PIT:::GKF-::Q::VK:SL:::VR:DKET::P::P:ELT:EIE:R::L:VAV::P

consensus       SPRLWAWTVDGELEASHVDQY-LPDEDGKLRFRRGERKQFARRWNGRF-RVGDDE----W
#oth            1111.2.1.1.22...1112112.21211.2.21....11222.21211..21111111.
rrnAC2045       :::P:T:Y:::VP::::::S-:V:S:::S:::D:::::::R:::DRM::::S::::::::
Hmu0123         ::V::::::E:LT::::::::DP:::E:::H:E::::::::GE:S::::::TER::::::
Hbo1859         TH:::G::::::::::DEQI::::ESPS::S::A::::VLTQT:::LLK:::::DTPTR:

consensus       EPADAGEYAIGAGLAVD--GERDLLADTTVIRIAR
#oth            11122.11211.2121111.212222111121221
rrnAC2045       :::S::::T:S:::S:ANA:::G:YSE:::SISE:
Hmu0123         ::::P::::L::HVN:::::HE:S:::EC:V:LV:
Hbo1859         VEPTC:VHE:::Y::L::::T:P--E:::E::::D