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3 genomes BUD2437 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC2880

-

Hbo0481

Hmu3181

- - - -

Pairwise sequence scores
Consensus score3457 Hbo0481 rrnAC2880 Hmu3181
2453Hbo0481 3454 1650 2045
2437rrnAC2880 1650 2846 2112
2923Hmu3181 2045 2112 3499

459 symbols
consensus       MARLDEPFDIGGVTVPNRLYRAPLLECAGNGEDAVDCLIDELEPAAAAGAGLICQGASLV
#oth            121122122111111111111211111111122112211211112122121122111221
Hbo0481         :P::ES::Q::::::::::::S:::::::::S:::::::S::::::E::::::::::T::
rrnAC2880       ------------------------------------------------------------
Hmu3181         :::::::V::::::::::::::::::::::::G::ET:::::::T::S:V::VF::::V:

consensus       RGEGGCAAPNMTRVHDPAFVARLERLTGAIHDHGGRIFLQLAHGGLRSMATWHAGYRRQN
#oth            2111111112......11..22.1...11......1.11..11......11...1..111
Hbo0481         :::::::::G::::::R:::SE:S:::D:::::::K:AV::E:::::::E::::::::A:
rrnAC2880       ----------::::::::::E:::::::T:::::::::::::::::::::::::E::::H
Hmu3181         T::::::::::::::::E:::G::::::::::::::::::::Q:::::::V::::::S::

consensus       PDLEQLAVSRPPWQLRALDRAGLIDLDPRVLDTDEVYELAAQFGRCAGYAADAGYDGIHL
#oth            .211.....1..11.121112.1111212..2.2..11..11...2.11111....1...
Hbo0481         :E:::::::S::RL:::MAAT:FL:Y:AH::T:::::::::D:::S:AWC::::::V:::
rrnAC2880       ::QR:::::::::::QM:::L:::S:Q:D::S:E::WA::E:::::::::VE::::::::
Hmu3181         :Q::::::::::::::V:::::::::S::::::S:::::::::::V::::::::::::::

consensus       SGANMSLIQQFLSPFYNRRNDEFG--------DGVRFLEAIHDAVREHAGDVPLVTKVPA
#oth            11...1.11..1..11...1.1.1111111111.1....1.1.11.11.1..111.....
Hbo0481         A::::G::H::::::::::::::::::::::::::::::V:L:EI:SR:::::VM:::::
rrnAC2880       :A:::::::::::::::::::Q:R::::::::::::::::::::::::::::::::::::
Hmu3181         :::::::L:::C::LF:::D::::PDPGEPAAG:R::::::::::::::D::A:::::::

consensus       ETAAPAFVRRHLSADDAVGIAARLAAAGYDALVPVEVSPFWDMSIVRGAFPDRAWDAADL
#oth            .....21.....12111.111211112...11...11.2...1...1.11.1...21211
Hbo0481         :::::PV::::::::E::::C::::DY:::::::::G:V:::A:::K:Q::K:::TDDRY
rrnAC2880       :::::S::::::TRR:G:A::T:A::I:::G::::::::::::::::::::::::::S::
Hmu3181         :::::::::::::F:::::L:SD:V::::::V:::A::T::::::::::Y:::::S::::

consensus       QDDYAAAFGGRLRARAVALLNRLQARRFDREPGWNADLCRAVRERVDVPVLCEGGIRERA
#oth            122..11...2....11211.1111121111.1....1..11.11.11...1...1.2.1
Hbo0481         :SG::E::::Q::::L::VG:WIESKVY:F::A:::::::R::RV:E::::::::::G:D
rrnAC2880       ::::::V:::::::::IQ::::::::::S:D::::::F:::L:::::::::L:::L:T::
Hmu3181         RGE:::::::P::::::S::::::::Q::::::::::::::::::::A::::::::::::

consensus       DCDRLLGAADAPPAADAVGMGRPFYAEPRLGARLLDG---ADALCESCNNCTVPQVAGEP
#oth            21..1..222221.1.1..11.........1..1.1.1111111.1.....11..11.11
Hbo0481         EM:::::D-----:C::::L::::::::::P::V:::DRETRVV:::::::A:::A::AN
rrnAC2880       ::::Y:::TG:T::::::::A:::::::::::::::::::::::::::::::I:::T:::
Hmu3181         T::::::G::R:::::L::::::::::::::::::A:::::::::A::::::::::::::

consensus       GRCRTPAIVREAARLRAAGAYERDEDASDDLAASDD---
#oth            .1.....111.21..122...1.2222222222122111
Hbo0481         :V:::::VLQ::G:::K:::::::TSE:V::::::VDRS
rrnAC2880       :::::::::::Q::::RD:::::T:-----------:::
Hmu3181         :::::::::::R:::A:R:::D:PG::T:ESGP:G::::