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3 genomes BUD2438 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1191

 -

Hbo3020

Hmu2714

 - - - -

Pairwise sequence scores
Consensus score1690 Hmu2714 rrnAC1191 Hbo3020
1062Hmu2714 1368 884 930
1401rrnAC1191 884 1708 1288
1498Hbo3020 930 1288 1686 

221 symbols
consensus       MPQELGPLARELSLPYYDDALPAHDRFHANRVRDIAIRLANDCNRAVDRDVLSAAAWLHD
#oth            1211111111211221121111111211121111212111221222......1.1.....
Hmu2714         ------------------------------------------VD::::::::::::::::
rrnAC1191       :T::::::::T::M:::::::::::Q:::K::::::L:::G:::GS::::::A:S:::::
Hbo3020         ::::::::::::::S::E::::::::::::::::V::::::E:ENN::::::::::::::

consensus       IGRPRERVGEIDDHDEWATAEAAALLADEGVAADRIAAIKHCIRTHSIRSSSPEPETIEA
#oth            ....1..1.1.11..1.1...112...1...22.1.21.1..111....1.....112..
Hmu2714         ::::L::::::::::::::::TRE::::::::::::D::A::L:::::::::::::SP::
rrnAC1191       :::::::A:::::::D:::::::Q:::A:::KP:::GR:::::QA::::T:::::R:L::
Hbo3020         :::::::::K:GN::::G:::::::::::::PT:H:::::::::::::::::::::::::

consensus       KLLFDADKLDAAGARGLVRLACIVGERSGRTGEKYAVIDDASAHDLATPDSPDVSLLREW
#oth            ...........1.11.11.1..1.......1.11..11..21122211211..11...1.
Hmu2714         :::::::::::T:TV:I:::::V:::::::::TQ::HL::::T:E-::T:R:::::::::
rrnAC1191       ::::::::::::::::::::::::::::::::::::::::T::T::G:SN:::IE:::D:
Hbo3020         :::::::::::::::::I:M::::::::::A:::::::::ST:SGM:S::::::::::::

consensus       ARERLNRLYTQPGRRLGRSRRRFMDEFFTQFAGEIGVAGEA
#oth            .2...22.1.2.1....21.11..11..11.21...12112
Hmu2714         :::::EQ:H:P:A:::::::W:::EG::E::ES::::RAD:
rrnAC1191       :Q:::DT::::::::::QT::E:::::::H::::::AS::W
Hbo3020         :E::::::::S::::::E:::::::::::::T::::::::K