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3 genomes BUD2439 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC3458

 -

Hbo2800

Hmu2491

 - - - -

Pairwise sequence scores
Consensus score1270 Hbo2800 rrnAC3458 Hmu2491
855Hbo2800 1270 756 807
1159rrnAC3458 756 1275 1092
1183Hmu2491 807 1092 1266 

172 symbols
consensus       -MDSREYAFEGATPTINGYAHVSRDATLVGDVRIAANANVWPGVVLRGDVAPVEVGRESA
#oth            11.1.1.2...2..1.211....121.1....1121..1..........111.11.1..1
Hbo2800         MN:P:I:E:::D::::DAD::::QMS:::::::V::::S::::::::::IGS:RI:A::H
rrnAC3458       ::::::::::::::D:H:::::::E:::::::T:GP::::::::::::::::::::::::
Hmu2491         :::::::S:::E:::::::::::::::V::::::E:::::::::::::::::::::::::

consensus       IGDNAILHASTVGERVMVGHGAVLNDAHVEDGALVGFNSTV-SDATIGEGSIVAMGTVVP
#oth            11.1.21....1.12......1...1.2.1.11.1...1.11111.1.11....1.1...
Hbo2800         VA:::V:::::I:N:::::::S:::E:V:::ST:I:::A:INT:V:V::R::::A:C:::
rrnAC3458       :::G::V:::::::K::::::::::::::R::::::::::::::::::::::::::::::
Hmu2491         :::::T::::::::N::::::::::::T:::::::::::::::E::::S:::::::::::

consensus       PGYDVPPESFVRGSPAEVTPLSETTIDPEEVFEAFSSGDYANLAARHEELFE
#oth            1.111.11.....1..2......11..11111111.111.11..1..11...
Hbo2800         E:R:I::::::::V:::::::::AG::I::LLSKY:ATE:TE::E::A::::
rrnAC3458       :::E::A:::::::::T:::::::::::N:::::::::::::::::::D:::
Hmu2491         :::::::D::::::::S::::::::::::A::::::::::::::::::::::