3 genomes BUD2440 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3057 - Hbo3509 Hmu2773 - - - -

Pairwise sequence scores
Consensus score	1450	Hbo3509	rrnAC3057	Hmu2773
730	Hbo3509	1892	379	452
893	rrnAC3057	379	1433	624
1015	Hmu2773	452	624	1543

269 symbols
consensus       MRARRVVFGLVGIVATAVAAGLVFAP-----VAPVDALVARGESAAARQILLAGSLLAGL
#oth            .1212111.21.211111111.111111111111122.122221222212...1111111
Hbo3509         :K:L:T:A::A:::VV::TI:::AGV::::::T::S::SE:VS:LDGE:Y:::---::AV
rrnAC3057       ::L:T::::T::LL::G:::S::::::::::T:AGES:::VLG:V:PTT:::::::TV::
Hmu2773         ::V:V:L::V::T::::L::::L:::ETLLS:::::P::TL::A:N:::L::::::::::

consensus       CLLGAAWLARL--RAGEGGDAFDAARAEPPEAVTAAASRRFGAAIDAAIDDAIAG-DDAA
#oth            211212121211111122211.1212221..21112211121122112111.2111..2.
Hbo3509         L:::GL:F::R::::SSTS:R:TEL:EM:::GAS:P::I:V:GRF:RVVGN:LSSD::D:
rrnAC3057       :AVL:G::GG:::LG:GSPT:::V:VDSL::D:::TE::L:A:D::::::::V:::::::
Hmu2773         Y::V::RS:T:PS::::::::::::T::::::::T:RQ::T:::LA:T::::::::::E:

consensus       MDAVRERLRETATAAYADGAGVDQADARRAVRAGDWTDDALAAALLSADEGPA-SLRSRL
#oth            112.21.1111..21..22.112122.111112.2....22...2.122111211.21.1
Hbo3509         :TP:VT:::::::GL:::V:N:::QT:::CI:N:E::::E::::F:A:GS:Q::P::::I
rrnAC3057       ::T:T:::TAA::T:::I::::S::S:QQ:::::T:::::V:::M::PT:-:Q:::LA::
Hmu2773         L::::::F:::::::::QT::CGPE::::::ER::::::RT::::::D::::SH::W:::

consensus       RLWLDPAAERRRRIRRTVDAIAQL------------------------------------
#oth            .1....22.....221.11.2221111111111111111111111111111111111111
Hbo3509         :V::::PR:::::VDA:L::LFE:REGVVPASEDSERLAERESETLRESEDSAGREPETS
rrnAC3057       ::::::ES:::::::::::::::V::::::::::::::::::::::::::::::::::::
Hmu2773         :::::::::::::LH:::R:TRG:::::::::::::::::::::::::::::::::::::

consensus       ------------------------AGGER
#oth            11111111111111111111111121.12
Hbo3509         GTDEGEVESIAPDETDHASATKVD::::Q
rrnAC3057       ::::::::::::::::::::::::S::::
Hmu2773         ::::::::::::::::::::::::TE:WP