3 genomes BUD2441 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1963 - Hbo0421 Hmu0027 - - - -

Pairwise sequence scores
Consensus score	752	Hbo0421	Hmu0027	rrnAC1963
452	Hbo0421	769	262	140
543	Hmu0027	262	828	218
325	rrnAC1963	140	218	609

119 symbols
consensus       --ASRRRDAIAAA---AGLIALLAAERACNALTAPAAVAAGVAGALAVEALF-LRATAVA
#oth            112221111222211112122212222222212112.112.111..21.1111112.2.1
Hbo0421         ::M::::::::TL::::V::PT::TVVV::SPVT:F::G::A:::::I:::LS::::R:R
Hmu0027         VP:TV::::LL::LAS:::L:::V::::VD:::::::I:S:::V::L::VA::::S::::
rrnAC1963       ::-----------:::--------------M:W:ES:::V::I:::G::::::VLD:P::

consensus       RLWERPAVQLASAAALLAVAAAGAALLGPLVVAALAWGLCTYFGILAVLLALGR-----
#oth            11.1.111111.1221.2.12212111..11111121..2..112.2111221111111
Hbo0421         :E::::::::::V:VG:V:::V:V:V::::AATV::A:::::L:F:VA:TL::::::::
Hmu0027         :::T:::I::G::GG::::GL::Y::A::::::::S:::V:::AL:C::::S::RPTTE
rrnAC1963       S::::RG:RT:::V:::G::GGF:V::::I::::AC:::T::::::::S:WYP-:::::