3 genomes BUD2476 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0075 - Hbo1842 Hbo2094 - Hut0350 - - -

Pairwise sequence scores
Consensus score	2378	rrnB0075	Hbo1842	Hut0350	Hbo2094
1699	rrnB0075	3595	1356	1223	1366
1760	Hbo1842	1356	2365	1326	1429
1677	Hut0350	1223	1326	2358	1517
1890	Hbo2094	1366	1429	1517	2369

468 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0075        MASISATLYELCEAVDHPVPTRDRDVEAVFAEIEFDAIEFCPIEFVILPIGDWLDIFGDK
Hbo1842         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hut0350         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo2094         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
rrnB0075        IVLSEPFESAVDCRLRDPGAVAELCRRARLLFRLDENRARTLVTEQVCECFRISHVGHCK
Hbo1842         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hut0350         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo2094         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       -------------------------------------------MGRPPTSVLLPTTTWTA
#oth            11111111111111111111111111111111111111111111211.11.....12..3
rrnB0075        RAISWFVNIGCAVLGFLSGFSQRSHKKLPSISALTFRVRMSNRQT:T::::::::VS:::
Hbo1842         :::::::::::::::::::::::::::::::::::::::::::::T:::::::::VR::D
Hut0350         ::::::::::::::::::::::::::::::::::::::::::::E:::V::::::::::P
Hbo2094         :::::::::::::::::::::::::::::::::::::::::::::::::T:::::::::T

consensus       ACDDVAAQLGPDDELLIVCDNESDPVADR-DGLPEGVRVIPAGDPDGCSGKANAIAVGME
#oth            ..22..3..111....122.322.1.1211221122.3212..1.2.........11..1
rrnB0075        :::::::::::E:::::IH:SKD:::V:::KP:S:N:QF::::::V::::::::::A:::
Hbo1842         ::::::S::::::::::::::DA::::A:A:D::::::LVI::::E:::::::::::::G
Hut0350         ::RQ::E::RD:::::VLP:H::::::KQ:T:H:PS:S:::::::::::::::::D::::
Hbo2094         ::QE::D:::::::::V:::D:::R:::::::::A::E:VV::V:::::::::::D::::

consensus       AARHDRIVWTDDDFHHPPDWLDRLHADYERHGPVSEVPFFVGRDPLSVLLEPGYAFGGTL
#oth            1.1...1.......2..1...13.21..221..11.1.1.1.1.1.12.1..3112...1
rrnB0075        ::N:::L::::::::::::::::::K::AEY::TT:L:A:::Q:::A:::::V:VL::::
Hbo1842         ::::::::::::::V:::::::S::::::::::::::::::::::::T:T::L::I::::
Hut0350         R:::::L:::::::E:::::::Q:S:::D:::::::::::R:::A:::::::TNV:::::
Hbo2094         R::::::::::::::::D:::AT:N::::T::::::::::::Q::::I:::::::::::F

consensus       GTWAGDHAWGGAVIFERSDLDEDAFRAELRQTISDDGLLGEHIDVTSLRRARRVPMGGSI
#oth            21122132...1.1.1.2112121.122.21.1....1.2.1111.121.112.22..12
rrnB0075        ::YM:::::::::::D::A:::ER:LS::::::::::::::::S:::VQ:V::::::::L
Hbo1842         ::YQDNK::::::M:::D:IG:T::L:A:C::V::::::S::L:L:T:::::L::V::::
Hut0350         T:::A:IP:::S:::::G::EV:::::D:TR::::::T:D::L::::I::VHE:SA::T:
Hbo2094         SV::::VI:::::::::::::V::::K::::::::::::::Y::::T:::::::E::::V

consensus       RESLERHVRFNQIVRRHDPRAAVVNAGLLLALTAGCVLFPLLTGVVLTLLHGAIYAAFGV
#oth            1111..11..311123.2.33222232212221233222.1123122.223221112..2
rrnB0075        :QT::::I:::::FST:::TV:KLSF:V:V:VLI:::F::::A-::::V:TAGVS:S:::
Hbo1842         :::A::::::S:::Y::E::GMG:IL::AALF:VMGA:S:V:VF:LS:::SV:V::F:::
Hut0350         D:::::F:::IK:::F:G:GIT:F::LA::::::LL::Y:V::T:AV::SY:I::::::I
Hbo2094         ::T:::::::MKL::Y:::P:::::IV:::V:::FSIR:::G::A:::AM:::::L:::Q

consensus       RRWTALLAYPALIAALPLFAYALARRTFVWGGRRYRWRSKFDVEVVE-
#oth            ..112..21.133131..21.121.1...........1.11...1121
rrnB0075        ::ASL::TV:::V::V::GL::F::D:::::::::::H:::::::LNE
Hbo1842         :::::::G:::MMLQ::::L:G:V::::::::::::::::Y:::::::
Hut0350         ::::F:::V::T:LN::::::::::::::::::::::::M::::::::
Hbo2094         ::::::::::SVL:MV::M:::Y::::::::::::::H::::::I:D: