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3 genomes BUD2478 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC3248

-

Hbo0927

-

Hut2595

- - -

Pairwise sequence scores
Consensus score3954 Hut2595 rrnAC3248 Hbo0927
1735Hut2595 4092 932 859
2728rrnAC3248 932 3985 1728
2493Hbo0927 859 1728 4110

560 symbols
consensus       MRRRAFLAAV-AALAGLAGCT-QTPGSDETADVTQAPAPTQSVTDAE---TNRSADPGRP
#oth            ....21.12112211111..11211112112211222211221.22111112212.2111
Hut2595         ::::T::GT::-VA::::::::-A:A:E::PG::TTV:GPTV::PP::::----P::E:E
rrnAC3248       :::::L::S:PG::::::::SFG:::::::::::P::R::::::::NDSG:E::::T:N:
Hbo0927         ::::R::::A::S:PLVT::::::H:DTTETTTE:GSN::STA:ET::::::T:N:V:::

consensus       P-----LRPD-GSQVITAETTPRTYALSAGGGGNDDRAAVGLW----FDQTATAAHPARV
#oth            1111111111121111111111.1...12112221122212111111.22111121.121
Hut2595         :::::::QSE::::LV::AA:D:V:::G:::::G:EE---W::DSFQ:VSEPD:DG::L:
rrnAC3248       -:::::::::NPTT::EL::G:::::::SA:LHTA::GH::::::::::::::D:::VT:
Hbo0927         :ETFPEA::::W::::::::::::::::G:FYY:::N:::YSG:::::TE::::N::::L

consensus       RGTLQNNNDFENTFRIEEIPPFGR-----------TDERRPAGY--------DRRARLHL
#oth            212.1.211.111112121111.1111111111111222112..1111111112222121
Hut2595         E:::T::G:::HVIAF:KLS:::G:::::::::::NGWF::D::LDVSIPGR::NLVQL:
rrnAC3248       ::W:::G:E::::::::W::GV::::::::::::::HS:Q:S:::::::::::HE:::::
Hbo0927         VFV:::D:::A::::LD:::::::GECIGDGPQDS:::I:S:::::::::::--:TD:VV

consensus       APTAAHDLADEEPSLGRAAEGTWRVDD-HAGPWIPDRHRLAPGEWVRGEYALVGRPEQDA
#oth            1..121111112.122.221.2..1221221112.122...1111121111.11212222
Hut2595         E::::::FV:G:::FH:DG::V:::QE:::DHD:::YL:::::QTIY:QW:::ASTVE::
rrnAC3248       ::::NNE::::V:::::T:::Y::::::-V:::M::I:::::::::QL::::::E:G:S-
Hbo0927         :::ES::::S:T:DYK::SD::::LSSPKS:::L:K:I:::AD:::::::V:L::::GTE

consensus       IGRPT-GRYEFRGADDALSIAVWDRRAPGPEAESRFAGRSVPPLPEDRE----RAWFHEA
#oth            211.11.1.112.2222.122...221...12..11..111.1112222111122.1...
Hut2595         :RV:VP:::STT::EV:::::::::T::::SE::IH:::D:::P:PT::DVTK:V:Y:::
rrnAC3248       -::::::S:::::QG:S::VS:::T:S::::T::::::::L::::G:GG::::VQ:::::
Hbo0927         Y::::::::::W:R:SG:TLN:::SE::::::::::::E:::S:T:QT-::::I::::::

consensus       DAETPAFARPSTEAATLPGAVDFELVNHSHER---LNCGHWDLYKLHDGEWFHIAPQNHT
#oth            222.12.21.1..221.122.21221.1112211112111.1....1111.1.11.2211
Hut2595         GP:::V:LH:E:::G:::LR:::T::::TV:QAFG::PYN:G::::::DT:Y::::::IP
rrnAC3248       ERV::::::::::R:::DTQ:G::M::N::G:::::Q:::::::::VG::::::::GV::
Hbo0927         ::T:ET:I:::::QLS:::::EYKFF::::TD:::VG::::::::::::::::LF:KI::

consensus       ADCRILQPGGRARLGLRAFNGDAVGCGGD-PNATDDGL--TVGHLGGGRYAIVAG--DGD
#oth            21112.2..122222111.1.21111221112212112111111..1.2..212111212
Hut2595         LPGGS::::SI::KTHTL:::HRL:DPPG::TV:::SYRR::P:::P:L::YARDLMFE:
rrnAC3248       ::::::K::::DQW:::::::Q::::ST::-DC:C::::::Q:Y::::E::::::::Y:H
Hbo0927         M:::L:P:::TET:S::::H::::P::::N:::ATN:F::G::::::::::V:T:::::S

consensus       AARASGALLDLDGDQVAVTPADDVSAERNGDTVTVTHPRHGDGERNADATLEATRADSAD
#oth            222211..12121.21111.2111121.21..11112112111112211.2221121111
Hut2595         TY:CYA:::E::::P::::::T:L:I::G:::IEAV::EVDTSR::HRL:V:RAPEAET:
rrnAC3248       :TTE::::VK:V::SA::::I:G::TA:DS::::::TG:::::::P::::FSL::T:::S
Hbo0927         E:G:::::::IEA:::TIQ:T:::T:::::::::::S::Y::::HSP::::T::::::::

consensus       ERVLPEQVMAGARAAGRIGGLRNAIPFLADDVDRVVLETDEQVVNN--GIGNDIATRR--
#oth            .11.1..1.2222222122.1..12111211.21.111.11211221111121221.111
Hut2595         :::::::I:TVDY:T----::::::GL:EPG:GT:R:::PTYE:--::S:AG:::D:SPV
rrnAC3248       ::::A:::::S::F:::P::::::L:::T:::::::V::::::::::::::HNVD:::::
Hbo0927         :TR::::::Q:GNSGW::H:V::TV::F::::H::::R:::H:AESAL:V:::SN:::::

consensus       -LELRGQAYQIRRGRTD-SD
#oth            11122121122221211122
Hut2595         I:::PDGPVT::V:IE:LWE
rrnAC3248       :FRF::::::VS::Q:::Y-
Hbo0927         :::VD:T::EFTIE::E:::