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3 genomes BUD2485 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC2266

-

Hbo2872

-

Hut2144

- - -

Pairwise sequence scores
Consensus score2846 Hbo2872 rrnAC2266 Hut2144
1937Hbo2872 2864 1423 1448
2066rrnAC2266 1423 2862 1646
2180Hut2144 1448 1646 2835

377 symbols
consensus       -DDDRDWAARLDIRAAEPDDLLEHFDRRSFRGRRYRHLSDARHGVERGTAIVD--DAVVR
#oth            1221.1122212222221121111.222212.11.11..11...1....12.2111211.
Hbo2872         :M:::EYFE::EST:ET::E:F:::S:::ID::T:YV::::::::::::VV:EAA:::::
rrnAC2266       :-MS:::GSLF::DTG-:E:::::::TEW:::Q:::::::E:::::::::L:G:::VI::
Hut2144         M:E::::::V:GV:S::V:SV:AA:EESV:E::::::::A::::I::::::::::GT:I:

consensus       GYPSIPRALVLDPGIAEHFDGRVTI--EEKLNGYNVRVARIDGDLLAFTRSGHVCPYTTS
#oth            .1..1..2...1111212..1211111...1..1...1.111.12.1..11.2......1
Hbo2872         :::::::V::::S:V:AF::DDQ:VVA::::::F:::I:DV-:EP::::KG:::::::::
rrnAC2266       ::::M::::::E:A:R:T:::P:A::::::::::::::::::::::::::::F::::::R
Hut2144         :F:::::T:::::::V::::::::::::::R:::::::::::::V:G:::::Y:::::::

consensus       KVRALLDADSFFDDNPERMLCGELIGPENPYTDHDYEDVDSAAFRVFGIRNRETGRPLAV
#oth            1.12...221..112.12...1..1...1...2.1.221112112..11.2.1..2.12.
Hbo2872         R::D:::LS:::A:Y:KM:::A::::::T:::T::::GI::N:V::::::::A::E::P:
rrnAC2266       ::E:::::EA::::H::Q::::::V:::::::::::SE::EVG:Y:::::H::::T:MG:
Hut2144         :::E:::P:::::A::::::::::::::::::P:E:P::E::::E::DV:D:::::::::

consensus       ERRRDLCARYGLAQVRAFGECDPGAAVEAVREAIADLDAAGREGVVMKSADGTRALKYTT
#oth            12.1.1.22111221221.22212111111..2.21.121.1....11.1..1221....
Hbo2872         :S:::::DE::FP:P:L::WYSQ::V::G:::::SE::D::::::::::::::EMV::::
rrnAC2266       :::L:Q:TT:::DS:GHY:TFT:T:::D:A::R:D::N:R::::::L:::::ET::::::
Hut2144         DH:::::::HD::T:P:::::::VE:A:::::V:::::R::K:::::Q:M::::Q:::::

consensus       SAHHRADLEHAFSLPFDYGRDFVFPRVIREAFQAVERDEDRAALRDRARELGESILLPAV
#oth            112.111.11..1....1....1.2..1..1.....21122222.2..21...11.1...
Hbo2872         ES::HDE:VY:::::::R::::F:S:::::::::::F:::DER:::::HD::::V:::::
rrnAC2266       ::I:::::::::E:::::::::::T::::::::::::G:SP::V:E:::::::A::E:::
Hut2144         ::T::::::::::::::::::::::::L::V:::::L:RT:GES:Q::Q:::::::::::

consensus       ETVRAVDAGDTVGERHTVRGDPASIDALLSHLRNQGLELEIEQDRRENGERVVEFVKVAQ
#oth            ..1.1.21.211..2....1.122.11..11122211211112.121211.1.2.1.111
Hbo2872         ::I:E:Q::K:A:::::::::SE::::::D::::HS:TV:::S::::D:::I:::::::E
rrnAC2266       ::::::::::P:::T:::::::RT::D:::YFHD:::::HV:H:ETDGDQ:::T:T:I::
Hut2144         ::::::ER:E::::E::::D:::V:E::::::QEM:IK:::Q:::D:::::::S::::S:

consensus       STRDRTRYYLDGGTIDE
#oth            ..112121..1.1111.
Hbo2872         ::MG::Q:::::::YN:
rrnAC2266       ::::K:::::E::::::
Hut2144         ::::NVEN::::QV:::