3 genomes BUD2488 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0167 - Hbo3035 - Hut1548 - - -

Pairwise sequence scores
Consensus score	2473	rrnAC0167	Hbo3035	Hut1548
1593	rrnAC0167	2488	1266	1236
1988	Hbo3035	1266	2482	1642
1915	Hut1548	1236	1642	2498

324 symbols
consensus       -MENEATNVAIACQGGGSHTAFTAGVLKRLLRE--WDANHELVGISGTSGGAFNALAAWY
#oth            12221211.................1.12..111111222....1.......11.111..
rrnAC0167       ::SGH:PS:::::::::::::::::A:::::PA::V:::Y::::L:::::::LC:VT:::
Hbo3035         MS:::S::::::::::::::::::::::G:::::::NND:::::::::::::::::::::
Hut1548         :-MS:T:::::::::::::::::::::EE::::CD::EEF:::::::::::::::::V::

consensus       GLVTAGPDRAADLLDAIWDDIAADDAGDRLLNDWLVGRNRLQDNGFPLPRISPYQVPGKN
#oth            ..11111..11111122.2.2..12211212.2111222..22211.1.22...11..22
rrnAC0167       ::LS::::::::M::DV:C:V::A:P:EF:V:ES::W:S:::QLM::I:EV:::A:::-:
Hbo3035         :::::DA::SIE::::F:S:::::T:T:KIT:::V::MF::ES::::::QL::::T::SD
Hut1548         ::::E::::::::VTS::::L:::EY::::::S::TSL:::G:S:W:::::::::::::E

consensus       AGKERIREILERHIDFDAIPDLCAADAPDLVIGTVNINAGKFETFNDEAVTPEAVLASAA
#oth            2.1111112.11.....2112112222.2111.1.12.1.1....2.121.111......
rrnAC0167       ::QDWYLDL:D::::::DFDS:A::TP:HVT::A:DL:S::::::S:D:I:::T::::::
Hbo3035         L::::::::::::::::E:::::DR:::::::::::::::::::::::N:::Q:::::::
Hut1548         I:::::::V::T::::::::VF:RHET:E::V::::V:::V::::V::D::V::::::::

consensus       VPNLFEAVEINDHFHWDGLFSQNPPVRDLMTQDRARKPDELWVIQINPQERDGEPTSLAE
#oth            1.121....111.2...........12121122222..1...1...1..22211..1.2.
rrnAC0167       Y:L:Y::::M:::W::::::::::::KEFL:SE:P-::::::::::E::TY::V::::::
Hbo3035         :::F:::::::::::::::::::::IH::::G:V:N:::::::::::::K:QS:::::D:
Hut1548         :::V::::::HG:Y::::::::::::::M:H:PPE:::E:::I:::::::LE::::T:E:

consensus       IADRRNELSGNISLNQELRFVERVNEWVAEGHLPEDEFAQTEIHRIRLARDYHCSTKVDR
#oth            .1...1............211.21.1.121.2..2211221..11121212111.1.1..
rrnAC0167       :T:::Q::::::::::::D:I:T::D::RA:Y::-::YRHV::RHL::::KHTP:S::::
Hbo3035         :::::::::::::::::::A:::::::ID::::::HS:KK::::::Q:EHE:::::::::
Hut1548         ::::::::::::::::::G:::QI:::::::K::TE::::::::::EMG::::::::L::

consensus       DPRFIAELIDLGERRAAAFLNRR-
#oth            1.2.121.211.122122.12211
rrnAC0167       :::::ED:LER:::E:DD::::IA
Hbo3035         S:S:LQ:::::::Q:::E:RSS::
Hut1548         ::E:::::M:::RSQCG:::DE::