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3 genomes BUD2507 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2292

rrnAC2400

 - -

Hmu0202

Hut1491

 - - -

Pairwise sequence scores
Consensus score1350 Hut1491 Hmu0202 rrnAC2292 rrnAC2400
486Hut1491 1311 458 443 443
695Hmu0202 458 1145 642 650
1297rrnAC2292 443 642 1347 1331
1297rrnAC2400 443 650 1331 1349 

184 symbols
consensus       -MRSIFFVALLVVSLGCVSAATAAQSAGNLPAEPPGPQPTANATDTERIDGQTEIVGSEY
#oth            12122122121222122122111221221211212.11112111121...11.1122111
Hut1491         MN:TLPLL:A:AAV:VL:GT:APVAAQS:ATTA:N:----T::::V::::S::VLLDTG:
Hmu0202         :---VPI------------G::PTD:GNAST:S:D:----------:::::A:VL:N::W
rrnAC2292       ::::::::::::::::::::P::::::::::::T::::::::::::T:::::::::::::
rrnAC2400       ::::::::::::::::::::P::::::::::::T::::::::::::T::::::::I::::

consensus       LPDEGIARITLRSEAVQTVTISDAGRFQQGGKIPVRTVAMRSDDTATVEIPVTEKDGYVG
#oth            222212.21.1..122.11.11...2.21..2112.1.222211.11211....12.2..
Hut1491         NAQT:M:SV:I:::TL:QI::T:::G:W:::E:AR:S:MVKPGE:T:LKV::::VR:F::
Hmu0202         REAQSV:L::::::IN::::LT:::A:S:::TV:E:::EIEAGE:THI::::::VS:R::
rrnAC2292       :::::::::::::S::::::::::::::E:::::::::::::::::::::::::::::::
rrnAC2400       :::::::::::::S::::::::::::::E:::::::::::::::::::::::::::::::

consensus       VAISTANTPLYAEIIQRPSGGGLDILRALSSLQAWLAGATVAFVWMIIAGYNVIRGENGR
#oth            .2.1.21.1..21112321111.21111.1.11.111..22112..21..11.112.1.1
Hut1491         :S:G:P::-::GAP:SGMNTNT:SFVDR:T:PE:LAT::GSMAL::V:::LY:LWI:G:E
Hmu0202         :G:::RY:-::S:::ESG:::::::::::::::::::::AI:::::A::::::::R::::
rrnAC2292       ::::::::::::::V::::::::E:::::::::::::::::::I:::V::::::::::::
rrnAC2400       ::::::::::::::V:Q::::::::::::::::::::::::::::::V::::::::::::

consensus       PEVA
#oth            ....
Hut1491         ::::
Hmu0202         ::::
rrnAC2292       ::::
rrnAC2400       ::::