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3 genomes BUD2508 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC2293

rrnAC2401

 - -

Hmu0201

Hut1492

 - - -

Pairwise sequence scores
Consensus score2098 Hut1492 Hmu0201 rrnAC2293 rrnAC2401
882Hut1492 2137 821 785 781
1748Hmu0201 821 2100 1650 1654
1995rrnAC2293 785 1650 2088 2058
1997rrnAC2401 781 1654 2058 2088 

273 symbols
consensus       --MKPAPTFQNNRDRLTWLLAEYKLLIGGMLVGAAVLFAYYQPQLPTLPTWIAAIAVGWL
#oth            1122.1....211...11..21.1111111221.12121.11.11111.21111121111
Hut1492         MDRE:I::::DRW:::::::HS:RFW::TAV:V:VLAL::FR:TIDVP:ELT:::G-AFV
Hmu0201         ::-M::::::T:::::::::G:::::VT::IL::VG:VI::::::::P:A:::GVL::::
rrnAC2293       ::::::::::::::::VY::::::::::::::::::::::::::::::::::P:::::::
rrnAC2401       ::::::::::::::::VY:::::::::::::A::::::::::::::::::::P:V:::::

consensus       LLAIPCYLVGAKIARWLRRRNWVEVHHVNAVEDTTEKYYVPPELWREKEIDGPDPYPVNG
#oth            1111.1111.1111....111111.1....11.121.2....2..1..111.1....1.1
Hut1492         :VG::GIPA:FYFG:::::YRA:T:Y:::::D:VL::W::::A::D::RV::V::::::D
Hmu0201         ::GV::::::::::::::N:::I:::::::A:::VQ:H::::Q:::::::E::::::I::
rrnAC2293       V:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC2401       V:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       GSAWAVREYEYLDDIGQLRVEGVWLEGCQDTQLMTSKKQMQDIHGWLIDRAEELAAIRGR
#oth            1111....11.11112.11.2......1..1..1.1.1.111..11.1.11.11.1....
Hut1492         SDDY::::FD:Y:GLD::V:R::::::A::D::F:K:G:VEE::EF:L:GY:AI:K::::
Hmu0201         :::::::::::::::E:V::Q:::::::::::::::::::E:::::::::::::::::::
rrnAC2293       ::::::::::::E:::::::::::::::::::::::::::::::::::::::::::::::
rrnAC2401       ::::::::::::E:::::::::::::::::::::::::::::::::::::::::::::::

consensus       WSRGAVELQKKLVTADAEANERGQMIQKTAAKDTFGDLIEDGEN--PDDAPTIH---DLD
#oth            1..11111.1111..21..1.1.1..111.11111111211111111121.111111..1
Hut1492         I::M:MDV:RRTI::L:::Q:K:K::DQD:VE:VWQEAS:NI:DEL::TP:KLDPDA:::
Hmu0201         :::::::::::::::ES:::::::::::::::::::::VD:::D::F:E:::::::::::
rrnAC2293       ::::S:::::::::::::::::::::::::::E::::::::::::::E:::::::::::T
rrnAC2401       ::::S:::::::::::::::::::::::::::E:::::::::K::::E:::::::::::T

consensus       DAPDPTADAAVGDGQDEPT--NQQPQDPQLNDD
#oth            1221.11.12111122222222112121221.1
Hut1492         GYRT:EH:--LN:HESLTAAM::HDHIQTET:E
Hmu0201         :H-::::::V::::PADVSVPD::N:N::M:::
rrnAC2293       ::::::::::::Y::::::::GE:::::R::::
rrnAC2401       ::::::::::::Y:::::::::E::::::::::