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3 genomes BUD2509 4 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC0371

- -

Hmu1352

Hut0100

Hut0101

- - -

Pairwise sequence scores
Consensus score4668 Hut0100 Hut0101 rrnAC0371 Hmu1352
3452Hut0100 4749 3281 2124 2068
3471Hut0101 3281 4850 2076 2114
2968rrnAC0371 2124 2076 4647 2787
2953Hmu1352 2068 2114 2787 4545

675 symbols
consensus       ----MSNNPDIDSDDDNASEGI-G--LATIVPDFIRRRFALKFGLVLIMMGLILAGIGFA
#oth            11112233112322133221.22122.1111.121.12.....11..32.1.11121.11
Hut0100         ::::::TD::::V::--PA::VL:QT::::::::::K::::::A:::::::::::::::T
Hut0101         :::::::::::E:E::D:GG:PI:RL:::::::V::K::::::::::V:::::::::::T
rrnAC0371       MSSGETQI::SSEN:S:::G:::-:::::V:::A:::N::::::I::FI:A:SVGLV:L:
Hmu1352         ::::-------M::TESS:::::-:::QK:T:N:L::S:::::::::LV:::SVGI::::

consensus       ATEALANQTEEDVRAEYENLAAQQADIVEQWVDRNALSTRLASNNDGLGADDDADADLA-
#oth            ..131231112222221122.3.112.111.131.3112312.32121222233232131
Hut0100         ::GT::D:V:::A:::::Q::T:::T:::K::E::SV:V::::QST::T:GS:QST::T:
Hut0101         ::G:::E:V:::T:::::R::S:::S:::::IQ:::VTAD:::T:::::::LSEK:T:NR
rrnAC0371       :::QVK:Y::QQ:LSD:::A:::E:::LS::::::R:::QFV:S::IWASS:TD:I:IE:
Hmu1352         :::EVRT::QDN:EGQFQ:T:V::S:::::::TQ:K:::K:I::Q:QW:-::E::LE:::

consensus       --LRNLLSALSADAAGIHLLERDAAQSAVVAQTSNS---------LAARNIPLSDTAQAW
#oth            1112223232121.3221.11323232322112132221111111233331112323231
Hut0100         ::::R:WGTILG::E:FY:VSY:G:EP:II::A:S:ST:::::::E:NQQ:::V:S::S:
Hut0101         QLA:P:F:KV:EG:H::Y::SP:NGTEVLAM:YTGDTLEEINRGA:QS:T::V:E:DHPL
rrnAC0371       :::N:RKA:::::::D:::V::N::::Q:::S:::::::::::::QVLT:S::ES:SR::
Hmu1352         :::Q:E::R:::::KNV::::TTPSG:S:::S::--::::::::::R:DSSA::GNL:-:

consensus       LSETNL--DDTSRVQMSDAY--QRNGEPVVGFVSPVDAS-QNRYLVIEYRLDELASSIQG
#oth            2222322232213.31111.1133212211..2111321121.1122.122221121132
Hut0100         VADVDVTTM:::E:E:::V:::T:::DA:::::::IQD::PS:::::::DATR:G:::V:
Hut0101         :::LQ:GI:EYPQ:::TE::::EVS:::::::IKR:EHNVA::::FM:F:VSN:::A:ES
rrnAC0371       :TG::F::ETA:D:VV::V::::T:SG:::::::::::::::::IL:::S:::I:N:L::
Hmu1352         T:::E:::S:::::LV::::RDSQDS:STI::A:::P::::::I::V::::::::D::SP

consensus       AR--D-DASAHFTQVVNSSATVQVDQRAAAADDAEGAVLSTYGNNQTVRQAMAEANDLRG
#oth            33121222232.2.1111231.22.3232332131132122.223322312232122112
Hut0100         D::Q:DTPAN::A:II:::G:::::S:M:T::::GS::G:P:::S:::TE::ESPGE--N
Hut0101         EGLT:G:::T::S:::::DN:::A:T::L:G:GQ:ST::G::::EE:I::::::PA:--:
rrnAC0371       NN::-:R:EGG::::::G::V:MI:EPRDGSRGLG:NM:QS:SE:SRANEPIS::::::S
Hmu1352         :E::-::E::R:::::D:HR::V:::AY:SNS:R::MT::::----P:Q:TVDD::A:::

consensus       AARTSGVRIDE-PNADV-LNEAYAVGYAPI--QG--IDTDWVVLTHAPTSDLFGFVQTIQ
#oth            332211.2231122221113.3.1....111131221122.2111...2.21....1211
Hut0100         :::::::::V::DDTS::VG:P::::::S:EVEDEG::RQ:A:V:::::::::::::::S
Hut0101         QN:::::::I::N:PT:::D::::::::SV::G:DV::PS:TIV:::::::::::::::S
rrnAC0371       SEQQ:::TA:M::A:::::S:R:T::::::::::::--::::::V:::N:AV:::::NV:
Hmu1352         TQESAS:KTTMA::::LG:::E:T:::::V::S:::--::::::::::S:TV::::EDV:

consensus       KWGQIVTALAALLIGGVGAILGYSTASSIDRLRRKAEEIRQGNLDVAIHTSRIDNIGRLY
#oth            21.1.2.112122.1.1..1..11.11.1.1.1..111111....1212.1...1.....
Hut0100         :::::::I::::::::::::::::::::V::::::::::E::::::::::T:::S:::::
Hut0101         :::::::I:::IM:::::::::::::::V::::::::::E::::::::::T:::S:::::
rrnAC0371       QY:L:G:::MV:::A::::::::N::T:::::T::TDQM::::::ID:A:::::::::::
Hmu1352         LY:L:A::GLVVF:::I::A::W::S::::T:T::T::M:E:::::ELD:::::::::::

consensus       DGFANMRDALREQIDEAERARKEAEVSRAEAMEMNQYLQEKAEEFSDAMERCAAGDLTRR
#oth            2...1...1.1...1...1.1..........2.112...1..1.1.33..31.1.11.2.
Hut0100         E:::::::S:::::::::Q::::::::::::T::::::::::::Y:HI::::::::::::
Hut0101         ::::::::S:::::::::Q:::::::::::::::::::::::::Y:QT::Q:::::::::
rrnAC0371       S:::D:::::K:::N:::::Q::::::::::L:V:K:::K:::::::V::ET:::N::E:
Hmu1352         ::::D:::::::::::::::::::::::::::::SN::::::T:::V:::KT:G::M:T:

consensus       MDIDGENEAMDRIASEFNEMIDELEKTTGQLKSFADEVAEAGDIVQNSADSVRDAAEQVA
#oth            .22.....1..1......2.11.....1...1..11..1.1.11.12.11..11.1.1..
Hut0100         ::::::::::::::::::::::::::::::::::::::E:::E:::::S:::QE:::H::
Hut0101         ::::::::::::::::::::::::::::::::::::::E:::E:::::S:::QE::::::
rrnAC0371       :AT:::::S:::::::::G:V::::::I:::N::::::::S::V:LS::E:::::S::::
Hmu1352         :EQ::::::::T::::::A::E::::::::::::SE::::S::V:LQ::E:::::S::::

consensus       ESVQRISDDAYEQQDRLQEISEDIDALVARLDELAAEHPDVDLEDQLAQIREVARTLAAA
#oth            1.2.1......1.111.11...11.31221.1111.22111.11.1.21111..111131
Hut0100         ::::::::::::::E:::::::E:::IA:::::F::A:::::F:::::::D:::::V::V
Hut0101         S:::::::::::::E:::::::E::G:S:::::F::::::::F:::::::D:::::V:DV
rrnAC0371       ::T:K::::::D:K:::AT::::L:T::DT:E::E:DN::I::G:S:ERF:T::T::QS:
Hmu1352         ::I:K::::::::K:Q::T::::L:E::ET:EA:E::QQA:::G:S:T:F:T::TQ:QE:

consensus       ADLAEQMLEESESVAGAAEEQAAELNEVSQRAEDLIRYAGPLGDILDRFETEAEHEFYFP
#oth            111111112.111................1..11.1...2..111.1..1.11....1.1
Hut0100         V::::ET:::::::::::::::::::::::::G:::::::::HEV::::K::S:::::::
Hut0101         V::::ET:::::::::::::::::::::::::::::::::::H:V::::::QS:::::::
rrnAC0371       :ETSD::MA:TQT::::::::::::::::S:::Q:K:::K::::::N::::::::::V:S
Hmu1352         ::TS:::MS:::T::::::::::::::::S:::Q:K:::R:::::::::::::::::V:S

consensus       GGPRDD----EENEE
#oth            1..113112222211
Hut0100         T::::E::::AD:G:
Hut0101         T:::::::::GP::Q
rrnAC0371       :::SQS::LG::E::
Hmu1352         :::SQTTRTQ::S::