3 genomes BUD2511 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3270 - - Hmu2178 Hmu2449 Hut0003 - - -

Pairwise sequence scores
Consensus score	1659	Hmu2178	Hut0003	Hmu2449	rrnAC3270
1280	Hmu2178	1710	1166	690	650
1182	Hut0003	1166	1710	652	665
939	Hmu2449	690	652	1823	786
978	rrnAC3270	650	665	786	1666

253 symbols
consensus       -----------------------MSGQQDDRYAF-DGLPIEPIEAGSTLLVAGPALSGAR
#oth            1111111111111111111111112222222.3.2111.11.121.121..1..211211
Hmu2178         ::::::::::::::::::::::::::GA:GV:E:G::V::::::::::V::::::::R:E
Hut0003         ::::::::::::::::::::::::::E:T:G:::D::::::::DP:::V::::::F:P:E
Hmu2449         VRCGRVESPTGNGPGATRESLEIDMS:VKA::G::E:V:L::VP::TN:::T::S:G:L:
rrnAC3270       ::::::::::::::::::::::::AQ::::::T:::D::LN:V:P:TS:::T::G:::::

consensus       ALVRSLLA-GPDTNDGMLLVSTDQSAETLLKDCRRHGGSLDTDRAGVIDCTGQESADSEE
#oth            322111132113232.311121232222212211132122.2323221..2111233223
Hmu2178         D::::MV:D:TE:G::::F:::N::C::::DS:::LHP:F:::::::::::::DL:E:QF
Hut0003         :V::::VMG:TSVE::S:FI::SMTS:K:::A:::TNP::::TLT:I:::S:::PKP::I
Hmu2449         Q:SL:::S:::-ADE:V:::TA:V::SEVVA:FEAV::DA:PGKMCLV:::-H::DGT:S
rrnAC3270       EMGLR::C:S::::G:TV::A::SD:T:M:::FE::::A::RE:VR::::A-:::G:LS:

consensus       D-RVRGVSTQADLTGIGMRFSALYESLYADAADGRVRTGLISLSPLLMYVDDVRALFRFL
#oth            .22.3312.11......132.11..11.111321...1.221.21.21.21.2.211..2
Hmu2178         :L:::SI:::S:::::::::::::::::::::::::::::V:::S:S:::-:M::::::V
Hut0003         :AE:KY::::S:::::::K::::::::::::V::::::::::::S:A:::-:L:K::::A
Hmu2449         ::::H::A:P::::::::SL:::::Q::D:GLQ-:::V:VYT:G:::V:A::::PVY:::
rrnAC3270       ::N:ST:N:P:::::::IEY:GQ:::T::SGYT-:::::I:T:T:::V:S:::::VY:::

consensus       QTLAGRIDSADGLGVCAIDPTAHDERTVNSVAQVADGRIEVRE---DDA--DGELRVRGL
#oth            2.22..122.1...2122..21.112112122121...112.122211211122...2..
Hmu2178         :::S::::::G:::LFS::::T::TK:::TIS:::::::::::PEDG:::::::::::::
Hut0003         ::::::::::G::::F:::::T:::::::TLG:::::::::::YDG::EAI::::::Q::
Hmu2449         H:V:::VRA::::::::V::A::::::IR::::AF:::V:L:::::G::::GHQ::::::
rrnAC3270       N:IT:::GT:::::I:VL::N::E:QV:E:::RFF:::VDI:A::::QG:::LD:::A::

consensus       RGQPDGWQPFTL-
#oth            32..31.211212
Hmu2178         ::::::::::::P
Hut0003         PA::S:::::S:S
Hmu2449         S:::G::LDV:::
rrnAC3270       QN::TN:T:VGT: