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3 genomes BUD2514 4 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC0248

- -

Hmu0126

Hmu1094

Hut0123

- - -

Pairwise sequence scores
Consensus score2594 Hmu0126 Hut0123 rrnAC0248 Hmu1094
747Hmu0126 2684 386 441 426
1633Hut0123 386 2620 1229 1333
1799rrnAC0248 441 1229 2368 1501
1980Hmu1094 426 1333 1501 2671

358 symbols
consensus       ---P--L--VSG---AAQDIEAILAESGPDYEDLSFERLRGGHASDSRMVTLEHAGEAYE
#oth            2221221222231113333122323221222233221333323322332112223.2311
Hmu0126         MRE:SS:QERDPDPFSE:M:ALMV:AA:IEC:V:DA:P::T:S:TTY:VDVRDQE:DRRT
Hut0123         :::-::-::::::::::EI:::::G:::::::SY:::ETP:DTR:::HF::V:YQ::S::
rrnAC0248       :::-::-::---:::---------------------------------::::R:N:::::
Hmu1094         LPT:VL:AV::T:::PVT::::V:E::::::T:F::::PGS::Q::VY::::::::QE::

consensus       VVVKFAPEGDAT-FAVEPALHDYVAERTDVPVPDILVFEDEPDADVPPYFVTERIEGDNL
#oth            ..1.221221321111..3.121.121.22.1.21112232.13211.1.111121.211
Hmu0126         ::F:A:V:::::GLRR::::LR:::DH:SI::::VYGSHLQ::DLPA:S::M:HV::GSP
Hut0123         ::::L:::V:S:::::::F::E:::::::::L:G::::KE::EQ::::::I::::H::::
rrnAC0248       :::::K:Q::VP::::::C:::F::G:::::::R:::Y::N::::::::::::::H:E::
Hmu1094         :::::E:DDMES::::::T:::::S:::TL:::::::::Q::EVA:::::::A:L:::::

consensus       AEAFA------GLSTADRRRILAQAGRILGDLHSEIAFEAFGRLDLDDDRIIVRDLAASW
#oth            2132111111122122223212313.12.111.12121111.2111211111.2.2332.
Hmu0126         TQ:S:RENGDT:WPDGILDD:VR::::H:AA::DCGPVSG::PITV::GTLT:T:P:S::
Hut0123         D:H:E::::::SF:MDE:GA:MFEI:E::::M::T::::GY:::::::G:L:::::SWD:
rrnAC0248       ::E:::::::::::::::::V:::S::::::M::::G:::::::T:H::::::S:WMGN:
Hmu1094         ::SY:::::::D:::::HE:V:K:V::M::::::::::::::W:::WN::::::::T:::

consensus       RAYFEELTRAHIDGLADTPFEDLADRARRRLAPALSEVPEDGVPRLVHDDFRPANLLFDP
#oth            121112.1321122123.21211331133313221131.2312.1.1.1.11.2.12212
Hmu0126         QSWLW::A-:E:E:--::RLDG::STVQSV:DSEIP:L:DVD-:V:A:Y:YQ:R:VVV:E
Hut0123         ::::::::QG:::Q::E:T::::QPT::E:::DR::V::KQ:T::::::::::G:::IE:
rrnAC0248       QE:::S:::S:LSH:DG:::::MT:::WDCIE::::M:::::::::::::::::::M:EQ
Hmu1094         :::::Q::T::L::::H:::A::RE::E:N:K::::L:::E:::::::::::::::::::

consensus       TDADPITAVLDWQDVLAALPEYNLAQTEFLFIDSSFQDPDRRERLRAALYEGYRDERPFA
#oth            1333212.....22211221112..11.2112112121223.121.3311...3321222
Hmu0126         -G:GRVR:::::GGARSVHD:FE::V::QYCSGWAPLGS:K:Q:V::S:::::::R:SL:
Hut0123         -:GPE:S:::::EKT::GD:L:::::I:L:::::V:R:::E::Q::ER:::::GT:TD:D
rrnAC0248       :EES:::::::::::::::::::::::::::::::::::E:::S::TVFH:::QEM::ME
Hmu1094         :LD:::::::::::::::::::H::::::::V::::::ESV:::::S::::::NS:::::

consensus       FDEAYRARRPLYQLSTLLWRMAGFEAIFADASGLAAARAEAQYRQQFERLVEALPRN-
#oth            2..31332111.1111111112112332323.11112.11.21.22112.22322331
Hmu0126         T:::F:R::R::L:LSTVASLS-WAPYW---::PR:E:FV:SQ:SLV:S:LDQG:--:
Hut0123         A::S:Q:CK::::F:::V::::::DS:YG:::P::RT::::Y::E::TN:ART:EPDR
rrnAC0248       :::G:EQ:::::::::::::::::::V:D:K:::::::::::::::::::::EIQT::
Hmu1094         :::E:VLK::I::::::::::G:::GS::ED::::R:::::::::E::::::::::P: