3 genomes BUD2516 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2289 rrnAC2397 - - Hmu0205 Hut1488 - - -

Pairwise sequence scores
Consensus score	995	Hut1488	Hmu0205	rrnAC2289	rrnAC2397
262	Hut1488	923	225	261	258
726	Hmu0205	225	1021	709	719
973	rrnAC2289	261	709	1062	970
988	rrnAC2397	258	719	970	994

156 symbols
consensus       ---------MFGKIDIEDALAGVIFTASAFVTNGIASISLLGYDLSAAVFTA----QGTS
#oth            111111111.211..11..12121.21111.1111121211.2.1211.22311111112
Hut1488         ::::::::::EKR::LN::FVSPF:VLASG:QAKLFELV:F:L:F:KS:MVIGSGPAAIT
Hmu0205         ::::::::::Y:::::::::F:T::A::::::::::T:NI::N::G:::W:G:::::::E
rrnAC2289       MVAFAASPT::::::::::::::::::::::::::::::::::::A:S:::V::::::::
rrnAC2397       ::::::::::::::::::::::::::::::::::::::::::::::::::S:::::::::

consensus       IDLAFLLSLAALAMAYATNRVNESRNKNYQLDTDLVEIAKGSATVETYLALGTLVIVLFT
#oth            .22.1111121122.11..11121221212211..22112121211.11.21.221..21
Hut1488         :SA:KII:IL:IVV:IG::K------------P::DSMG----A:Q:WT:IA:IGL::AP
Hmu0205         :TF::::T:VS:FG::::::::R:SG:S:EI::::AN::R:E:PI:::::V::ALL::V:
rrnAC2289       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC2397       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       GLNILGAQDIIVGSAAIGLVVVAVEAAGYYVISYLG
#oth            11111111221211.12.11112.111.1.11..1.
Hut1488         PFSPM-LEAL:QS::IA:IIALV:QS::F:TL::::
Hmu0205         ::::::::EV:A:T::F:::::::::S:::::::M:
rrnAC2289       ::::::::::V:::::::::::G:::::::::::::
rrnAC2397       ::::::::::V:::::::::::::::::::::::::