3 genomes BUD2517 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2294 rrnAC2403 - - Hmu0200 Hut1493 - - -

Pairwise sequence scores
Consensus score	3088	Hut1493	Hmu0200	rrnAC2294	rrnAC2403
1502	Hut1493	2952	1438	1425	727
2881	Hmu0200	1438	3100	2804	1321
2984	rrnAC2294	1425	2804	3107	1481
1464	rrnAC2403	727	1321	1481	1492

392 symbols
consensus       MTDDNNDLYTPAQFREYQDGYGQRNPDEAHAHAGIVRDEKLSRYLSILETHYDPRRCDRP
#oth            121133211121121112212121311232321112112221122212222111332121
Hut1493         :S:::TE:::A::T:::LE:H:V:D:-K:GPQ:::I::PHI::TAA:ARED:::NLL:E:
Hmu0200         ::::SG::::::::::::::::::E:::T:::::::::::::::::::::::::Q:::::
rrnAC2294       ::::G:::::::::::::::::::::::V:Q::::::::::::::::::::::::H::::
rrnAC2403       ------------------------------------------------------------

consensus       AKMPGQAKDLDHVRDIVRIEGTETARRAMANGDMQSLKHFTGDAGQRADISGIKAIDQLR
#oth            321122221232222112212111213123211121111211111111121122112211
Hut1493         GE::ADLL:A:PWQ:::AV:E:::I:E::DA:::P::::I:::::::::V::LE::GD::
Hmu0200         ::::::::::Q:::::::::::::::::LE::::::::::::::::::::::::::::::
rrnAC2294       E:::::::::S:::E:::::::::::Q:::::::::::::::::::::::::::::::::
rrnAC2403       ------------------------------------------------------------

consensus       AQMTGPAPMFYEWAEPGTGKSNFACLLGQLWKEQHP-DALVASNIRTLEETDEWT--DGD
#oth            222112122212112112112211211211221221122222111112212111122111
Hut1493         DHV::D:VII:L::P::R::TD::L::S::YE:A:::G:ETG:::::WT:K::--::---
Hmu0200         ::::::::::::::::::::::::::::::::::::::G::::::::::::::::GD:::
rrnAC2294       ::::::::::::::::::::::::::::::::::Q:S::::::::::::::::::DS:::
rrnAC2403       ------------------------------------:------------------::---

consensus       RRDGWLANYGDLNEWLKQDGDPMHNEQVP-KLFIFDEASSNAGGSGKDGYDTKTKLGPLT
#oth            111112221221221222122211121111..........1.1.2.1...1111.....1
Hut1493         ----:IPT:P::MD:MEA:EEAVLAGD:ED::::::::::H:S:R:E:::EAGQ:::::V
Hmu0200         :::::::::::::::::::::::::T:S::::::::::::::::G:::::::::::::::
rrnAC2294       ::::::::::E:::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC2403       ----------------------::::::::::::::::::::::::::::::::::::::

consensus       YKIRKYGGSLIIIGHDGRDVHPLVRELAVCVHKEGLKEATFYEDVRNRKGVNPIFSVSGI
#oth            .........1.1.....1....1...111.11.111.1.111.1.21.2.1.211111..
Hut1493         :::::::::I:::::::K::::V:::M:T:IK:TSK:S:NVF:T:N::R:M:KLLEID::
Hmu0200         :::::::::::V:::::::::::::::::::::::::::::::::KG:S:::E:::::::
rrnAC2294       :::::::::::::::::::::::::::G::::::::::::::::::::::::::::::::
rrnAC2403       :::::::::::::::::::::::::::G::::::::::::::::::::::::::::::::

consensus       PETDWRYDDKEPTTWSWSGGEDDDDEVDPEDLSRKLAIYTVITAKESEPDRPNHEIADFV
#oth            .1..111111...1.1.11111.11111.2111111.21..111.122122111.1.11.
Hut1493         :A::HTFNTN:::A:R:D:TGE::GVPE:GSVAYDV:LW::VKC:QDGLT--HR:T:QY:
Hmu0200         :::::::::::::::::::::E:G:::::A:::::::V::::::::AN:EK:::::::::
rrnAC2294       ::::::::::::::::::S:::::::::::::::::::::::::::::::::::::::::
rrnAC2403       ::::::::::::::::::S:::::::::::::::::::::::::::::::::::::::::

consensus       PYSAEWVRQRWNEYQDDGKHRNVVGEVEELTA
#oth            ...11..11..1.1122.2..11.12.12..1
Hut1493         :::KS::GD::G:WE-A:E::DA:DK:::::E
Hmu0200         :::::::::::::::H::D::::::D::G:::
rrnAC2294       :::::::::::::::::::::::::::TD:::
rrnAC2403       ::::::::::::::::N::::::::::T::::