3 genomes BUD2521 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1693 - - Hmu0616 Hut0082 - - -

Pairwise sequence scores
Consensus score	2687	Hut0082	rrnAC1693	Hmu0616
1407	Hut0082	2586	769	888
1648	rrnAC1693	769	2543	1204
1899	Hmu0616	888	1204	2709

371 symbols
consensus       MAITKRSLGQNYVTAAGIALCGALLGHASVAGEDP--SAVVIGGLGLLPALALAAANYWL
#oth            .2211211122112221221222222222122221112111.2.2..21.12.12.2...
Hut0082         ::V:::T::T::::GT::L:::LFVPLL::Q:T::::::L::::::::A:GI::T:G:::
rrnAC1693       :S:VRP:---------------------------:::VD:::L:V::T:::::V::::::
Hmu0616         :DL::Q::::S::V:::V::SL::::::V::S:HGWLT::L:V:-::V:::T::G:Q:::

consensus       PASGIEGDQIWRVAEWAGLGIGILTLGNIAVLAAGHPQSDLGPS---ILASSVAIGGIGG
#oth            121.22.1.1.11.1121..1122.12222.12222121121111112.1111.2..21.
Hut0082         DRI:MH::::::::IH::::::VV:::SLL:FGL-TQVT:P:A:ESTL:V::I:L::T::
rrnAC1693       :V::LS:::::TA:::C:::VALF:VIK:V::L:PV:::SMI:::::::::G::V::F::
Hmu0616         :::::::E:V::::::SS::::::::V:V::::F:::L:::::V:::V::T:::::::A:

consensus       ILAGTILELRRSRARLAQSNEVLNRVLRHNLRNDLTVALGHLDELDANSA--GRQEDR--
#oth            212.121.1111221.21.11..2.....1....11.2..1.21.2222211.2212111
Hut0082         TV::::R:FD::TTT:T::T:::S::::::::::M::I::Q::Q::GD:R:::TL:P-::
rrnAC1693       ::F:WL:::::::R:::::::::F:::::D:::::N::::::G::QRET:ER::P:S:AH
Hmu0616         V:V::M::::NTN:::QR::D::::::::::::::::V::::S::E::VS:::Q:A::::

consensus       VRQLRGAIDDIAATTEKARQIELALDAERRAQHPIDAVSCVRERAEKIRAADPDATVETD
#oth            11112121.2.2.11....2112.22112.211.2.2.11.1121112221211111.11
Hut0082         T:TI:T:::::::LS::::LV:::VMR:E:QC::V::::::DAGI::T::::S:ISF::S
rrnAC1693       :E::S:T::G:I::::::::::F:F::D::::E:::L:P::::Q:K::TQST:E::::L:
Hmu0616         ::::E:KV:E:V:::::::E:DV::T::H:T:::L:V::H::::::AVET:Y::::::::

consensus       LPEQAWVYADWMLDTVLRNVIENVRVHAEATPTLRIDCERDARG-VFVRIADNCPSIPDH
#oth            1..211.11..112.1121.211121.21211112.22.222211.211.2.21111121
Hut0082         M::T:::R:::::E:AIEI:LRT::A:GD::-:IS:HL:KSDT:R:SI::V:VNG:LKPA
rrnAC1693       ::::SR:::::::::::::::::AV::C:E::::Y:SV:EHG:T::::H:G:::::::Q:
Hmu0616         :::S::::G::LVG:::D::V:::I::::GD:Y:::::::::S:::T:::::D::R::::

consensus       ERDMLNSGVETPLNHSEGVGLWLVRWIVESYGGAVHLAASDACGNTVRLERCAPPSGDEE
#oth            .122121....1.2..2.11..11211111...212122112211112.22221222112
Hut0082         :IET:E:::::::Q::::LD::I:::::SG:::SISVENG:T:AV:L::H:SM:------
rrnAC1693       :::V:::::::Q:C::K::::::TT::::::::::::TT::D-::::T::L:G:TVL::I
Hmu0616         ::P:FDH:::::::::T:::::::QSVM:::::D:T::::E:G::R:D:TFP:A::::::

consensus       RQS--LRRAE-
#oth            12211..1221
Hut0082         ---:::::GK:
rrnAC1693       ::T::::EWP:
Hmu0616         :F:DR:::::H