3 genomes BUD2522 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3101 - - Hmu2968 Hut1845 - - -

Pairwise sequence scores
Consensus score	1946	Hmu2968	Hut1845	rrnAC3101
1458	Hmu2968	2020	1052	1167
1454	Hut1845	1052	1928	1180
1540	rrnAC3101	1167	1180	1971

266 symbols
consensus       -MDGNDWDPAAYDDAHGFVHEYGDSVVDLLDPRPGERILDIGCGTGHLTAEIAD---SAA
#oth            1121.1..122.1.211..211.2.111....2...11..2.....1...11.1111.21
Hmu2968         ::TD:E::GGR::::A:::TD:::::::::::::::::::L:::::::::TV::AVG::G
Hut1845         MS::::::::::E:-:A::Y:::E:LLS::::Q:::::::::::::E::::::A::::E:
rrnAC3101       ::P::::::DD:::R::::::H:Q::::::::H:::QV::V:::::::::::::::::G:

consensus       EVVGIDASAEMIAQARDAYPDLTFRCADATAFDADERFDAVFSNAALHWI--DDQDAVLS
#oth            1.1...1.11.121..1111211.221.111122.12.........1...111.1..111
Hmu2968         D:L:::::S:::R:::A:::::R:D:V:::::ET::::::::::::::::::::::::SE
Hut1845         ::::::S::K::DA:::RHSEP:::V:::::::P::S:::::::::F::::::::::L::
rrnAC3101       :::::::::::V::::::::T:::EQ::VRSYT::RP:::::::::::::PGE:H:::::

consensus       TVADALAQNGRLVAEFGGRGNVAAINAALRAELRDRGYDAARPWYFPSIGEYAPRLEAHG
#oth            11.1..221..2...1.12......22.1221.12.....22....11.1.1.11112..
Hmu2968         R::A:::P:::Y:::L:AS::::::V::V:T::::::::::D:::::T:::H:TL::R::
Hut1845         :I::::V:::::::::::::::::::G::QSA::E:::::EL::::A::D::::::AD::
rrnAC3101       ::::::TES::F::::::Q::::::TD::I:::DV:::::S::::::::::::::V::::

consensus       FEVRLARLFDRPTDLDGGENGLRNWIAMFGDDLFAGLDDAERAAVISAVEDRLRPEQFDG
#oth            11112111.....2..1.22...21221.1.21112111211...2111..1..1121.1
Hmu2968         :A::S:TV::::::::-:PD:::E:L:V:::S:::P:S:::::::VA::::::::::Y:P
Hut1845         :::::::::::::E::::K::::QLYD::C:::LDH::NET::::::DA::A::E:Y:::
rrnAC3101       L:LQFS:::::::P:::::E::::::E::::EF:::V::S:Q:::L:::::::::TL:::

consensus       DT--WTADYRRLRLVAVRE-------
#oth            1.11.1.......2..1221111111
Hmu2968         ::ET:::::::::F:::PGESVSRQT
Hut1845         E::::::::::::M:::K::::::::
rrnAC3101       :::::V::::::::::G:-:::::::