3 genomes BUD2531 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0839 - - Hmu1326 Hut1506 - - -

Pairwise sequence scores
Consensus score	2307	Hut1506	rrnAC0839	Hmu1326
1162	Hut1506	2012	806	722
1611	rrnAC0839	806	2336	1044
1535	Hmu1326	722	1044	2362

322 symbols
consensus       MTETFYEVLGVDEDASTAAIEAAYRERLKETHPDVNDDADADEATQRVIEARDVLTDEAE
#oth            .11.1.11...221.1112..1...1........12.111.2111.11.1..1....12.
Hut1506         :AR:Y::I:::::S::::E::::::D:::::::::T::PN:TDTV:E::D::::::::::
rrnAC0839       :::::::::::PT::::::::::::::::::::::S:A:::G:::::L::::::::::G:
Hmu1326         ::::::D::::EP::TASD::D::::::::::::H:::::::::::::::::N::::DD:

consensus       RARYDRLGHDAYVAGDAAGPD--DARGAAARAARRAGW-----ADDRTDASTDSSTAGTN
#oth            .........1...11122121111222222211121121111112221211121111111
Hut1506         :::::::::E::::::LT:TA::---------------:::::-----T:::S:::T:RT
rrnAC0839       :::::::::::::::KHDI:::::GGSNVSE::::::YDGSAS:G:::E::::R:::R::
Hmu1326         :::::::::::::GA::::S:HH:::::::::::E::::::::::SE::GPSE:TA::::

consensus       AGQSDRARRERAASDRVADDRDAASRNATGANASNEQPADTSPD--NAANTARTRRSGSA
#oth            .2212.11.11211111222.1221222.1122221222212221122121211121.22
Hut1506         :T::S::S:SQST::PSSVG::GQA::G::E:PWT:P:------:::Q:G:E:AWS:::G
rrnAC0839       :--R:::::::::R::::::::ER:TTD:D:SS::::ST::TSGTAT:S:S:S:::::-:
Hmu1326         ::P:E:R::::T::E::RET:T:::SG::::T:TGQTT:G::::::SG:S:G:::PT:TS

consensus       TAASRQSDRAGNAATWSGESAYNVRQDDSPSRGSLRAFPAGRGLSLAAATFALYPILLAS
#oth            1221221.22211211.2221121122222122111211212212.2121.21..22121
Hut1506         DV:AHP::P--::VR::------------------:L::P:QSVV:LL:S:IC::PF:LF
rrnAC0839       ::T:GF::N:::G::::SS:::S:::T:T::::::LEM:T::::T:F:I::::::V::F:
Hmu1326         :RD:::R::IYG:G:D:::V:::::H:V:S:GH:::::V:DTP:::::L::V::::MV::

consensus       AILPAFPLVVNATVGLCTLLLIGYLQSQPEVGILVFGFWSVLTAGALVTGAIGVIGLVGA
#oth            222.2..111.21111.1.211...1.2.21111...2.11211211112222122.1.2
Hut1506         S:Y:P::V:I:FV:L::::V:V:::I:L:::::::::::G:V::::IL:::L:::T:P:V
rrnAC0839       :L::::::W::L:I:V:::FM::::::E:TIA:M:::S::LT::VL:::LN:SAFS::::
Hmu1326         TMF:D::::::::::::A:::::::::::S::V::::T::::VPL:::AFGVP:T::::L

consensus       LALGATWLPFGLSLLTASVVRL
#oth            1.1221...1.1.111211112
Hut1506         ::IT:::::L:::IVVFRL::-
rrnAC0839       :::SG::::::::::::::L::
Hmu1326         A:::SV:::::F::::R:::GP