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3 genomes BUD2534 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1719

 - -

Hmu2326

Hut0881

 - - -

Pairwise sequence scores
Consensus score1042 Hut0881 rrnAC1719 Hmu2326
570Hut0881 1078 367 367
765rrnAC1719 367 1056 620
791Hmu2326 367 620 1045 

147 symbols
consensus       ------MIREARPADERRLRAIQAAALDDPWPELLEAAADGPGLVLVLDADE-PIGYALA
#oth            1111111..12112.12...2..212.12.1.1..2222211211..1121.111..111
Hut0881         MSQDRVE::DI:::::::::S::R:V::H:S:Q::T:::S:L:IG::A::::RT:::VF:
rrnAC1719       ::::::::::::SE::V::::::TN:::E::::::GVGI:::P::::::IG:::L::::V
Hmu2326         ::::::::::GQ:G:WP:::R::::T:S::::::::LSLGE:S:::::TV::::::::::

consensus       VPDDDVAYVAEFAIAPDRQGQGNGSALMRALLDRLAEAGIATVRLTARADDNRARSFYRG
#oth            111121..11.1.11121111.2.12.122.11.1212.2211...1..112.111..1.
Hut0881         LVG::T:::P:I:VDAS:HR::I::::LET:MQ:AG:::V:EL:::V::A:E::::::::
rrnAC1719       :::HP:::L:::::::GK::::L:TT::NG:::::RTS:FE:::::::::::::::::D:
Hmu2326         ::::E:::::::::::::::E::::R:::::::::::H::D:::::::::AG:VHA::::

consensus       FGFEVAEELPDHYDDA--DGIVFARDL
#oth            1..212111111.111111.2112.22
Hut0881         H:::ER:R:SEY:ET:PTT:::L::SV
rrnAC1719       :::S::D::::::::G::::VL:V:::
Hmu2326         :::T:V::I:::::::::::L::E:--