3 genomes BUD2535 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0666 - - Hmu0649 Hut2666 - - -

Pairwise sequence scores
Consensus score	1728	Hut2666	Hmu0649	rrnAC0666
1407	Hut2666	1800	1185	1026
1486	Hmu0649	1185	1708	1079
1207	rrnAC0666	1026	1079	1434

243 symbols
consensus       -------EAAADADDVVTLADVRKEYDLGGTVEALAGIDLSLPAGSYTAIMGPSGSGKST
#oth            111111122222212112122111211111212112122121121111121.........
Hut2666         MEDAKGI:N:RGP:P::V::::::::::::::T::D::::T:::::::::V:::::::::
Hmu0649         :::::::M:Q:::::::::SG:::T:::::V::::::VS::::R:::::V::::::::::
rrnAC0666       :::::::-------------------------------------------::::::::::

consensus       LLNLIGGLDTPTSGTVTVNGRDVSAASEAERAAIRGTEVGFVFQTFNLMPRLTAVENVAL
#oth            ....1.1...111.1.1.1.2.11111.21..21..111.............1.....11
Hut2666         ::::::A:::::::::::::T::GGL::RG::RL::::I:::::::::::::::::::E:
Hmu0649         ::::V:::::A:E:::::G:::L:::T:G:::::::SR:::::::::::::::::::::M
rrnAC0666       :::::::::::S::Q:M:::Q:::::::::::D:::::::::::::::::::S:::::::

consensus       PLVFDGWDRAERRERARDLLARVGLGDRLDHRPQELSGGQRQRVAIARALAADPALILAD
#oth            ....11.1.21.1....2..22....1.1..2.2................12..1.1...
Hut2666         ::::AE:::R::A::::T::E::::::::::L::::::::::::::::::::::::L:::
Hmu0649         :::::::G:T:::::::::::D::::E::::::T:::::::::::::::::P::E:::::
rrnAC0666       ::::::::::R::::::S::SE::::::T::V:S::::::::::::::::ST::::::::

consensus       EPTGNVDTDTGERIMSLFDDLHAAGNTILLVTHERRIAEHAERIVHVRDGAIERIEDLSG
#oth            ........1..12.11.11.1.11...1.......11.11.1.....1..21112.2111
Hut2666         ::::::::::::E:::::A:A:DR:::::::::::::::::D::::::::VR::T:H:G:
Hmu0649         ::::::::E::::::::L::::::::::::::::::::A:::::::::::::::::E::D
rrnAC0666       :::::::::::AQ:LD:::::::::::F:::::::HV::R:::::::E::H:QSV::V::

consensus       DD-
#oth            221
Hut2666         :::
Hmu0649         --:
rrnAC0666       GEH