3 genomes BUD2538 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1483 - - Hmu1923 Hut1378 - - -

Pairwise sequence scores
Consensus score	2137	rrnAC1483	Hmu1923	Hut1378
1771	rrnAC1483	2257	1550	1509
1843	Hmu1923	1550	2133	1590
1800	Hut1378	1509	1590	2143

304 symbols
consensus       --------------VTNAKGGTGKTTVAINVAGALNDRGRDVLFVDLDPQGNATEGLGLV
#oth            11111111111111............1.1.......1..1....1.1........11..1
rrnAC1483       MMNRQSETGPARFC::::::::::::::::::::::::::::::I:::::::::::V:::
Hmu1923         ::::::::::::::::::::::::::::V:::::::E::::::::::::::::::A::::
Hut1378         ::::::::::::::::::::::::::I::::::::::::H::::::M::::::::::::L

consensus       EAYDADPPTLFDVLTDADARSSIADLIVEHEEMDVVPSSIDMLQAEHELTIADLVARVNT
#oth            11...2...1..1..22221.1121..1111....1..11.1..1.........1.1121
rrnAC1483       ::::::::::::A::G--DP:ALGE::C:G:::::I::::::::::::::::::I:::::
Hmu1923         :S:::Q:::::::::S::Q:::::::::D:D:::::::N:::::V:::::::::::::QH
Hut1378         D::::E:::M::::::RE:::::D:::::::::::::::V:L::::::::::::::WAK:

consensus       DDGIDIDPATLSSLAINVTPEMVTGAHALDLLDRALAELDADYDYVIIDSPPFYGKLTDT
#oth            1222.1.111.11111.1..12.1.2....2..1..121211..112..1.........1
rrnAC1483       QG:-:::Q:A:A:F:::I:::::::S::::T:::::ST:::::::::::C::::::::::
Hmu1923         ::S:::::E:::D:SL::::DS:S::::::V::E:::VVED:::::V::::::::::::A
Hut1378         :PTV:V:::::::::::::::T:::E:::::::::::::H:E::VIL:::::::::::::

consensus       GIYAAQNVLVPALTEASSERAIELLIDQMAALERQTDIEVNTLGVVANRVEQTNEDETML
#oth            11..1111.1......1........1..1..1.2.111211.1........2.1..11..
rrnAC1483       :M:::::::I::::::T::::::::M:::::M:::::ASI:::::::::::T:S::::::
Hmu1923         ::::S::I:::::::::::::::::::::::::G::G:T::::::::::::K::::::::
Hut1378         A::::RS:::::::::::::::::::::I::::S:V::::D:V:::::::::::::TA::

consensus       EWLNEVFDDFPVWEVRKRVALQRAFSAGQSIFAYEESVDMESVFLDIATELDRQFGLEDE
#oth            1.1221.212.1.............1..2...11.111..11..1.1.1111211.2212
rrnAC1483       ::F:MA:P:S:::::::::::::::::::::::T:::C::AA::E:::E:::E:::FT:T
Hmu1923         S::G:::EE::I:::::::::::::T::S:::Q:::::::::::::V::::::::::L::
Hut1378         :::ET::::Y::::::::::::::::::T::::::QT::::::::::::QIETRY:V:RP

consensus       EVPA
#oth            ....
rrnAC1483       ::::
Hmu1923         ::::
Hut1378         ::::