3 genomes BUD2539 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0725 - - Hmu0772 Hut0610 - - -

Pairwise sequence scores
Consensus score	2962	Hut0610	rrnAC0725	Hmu0772
2036	Hut0610	3268	1626	1667
2437	rrnAC0725	1626	2933	2131
2412	Hmu0772	1667	2131	2775

435 symbols
consensus       -----------------MLRRRGAGWLADRRRLPTAGRAVLGYYADAGVFDAGSLSLKRE
#oth            111111111111111112222221121121221112221.......2....21.11..21
Hut0610         VPATIEPDSIGDLIMRTT::::L:::::E:NK:::T:Q::::::::S::::RE:IQ:::I
rrnAC0725       ::::::::::::::::::VLKT:::V::::::::::L:::::::::T:::::::::::S:
Hmu0772         :::::::::::::::::----------------------::::::::::::Y::::::G:

consensus       IDRRTEAMIADVFDRVEDALADEFDRDP--VSFSYDTKLILPAQLTLGYVYRRARQRA--
#oth            1.2..11.12.11121...1121.111111.1.1.....21..1....11..2..11.11
Hut0610         V::::Q:::::A::P::::I:K:::I::AE:::::::::TM::E::::QI::T::H::SD
rrnAC0725       ::E:::::VN::T::I::::E:::G:-::::E::::::::::::::::::::N:::Q:::
Hmu0772         ::D:::R::D:::AL::::::EA::::S:::::E:::::V::::::::::::::::::::

consensus       GADPV------------IDAIENGVPG-------VDETALQAGPAQDLSPREMVVRAEQM
#oth            12...1111111111112.21111.11111111111111111..21211.111.111111
Hut0610         :::::ALSMWESDRETAS:LA::D:A:PVSFRKSISDAQW::::T---::QDL:DGGDYL
rrnAC0725       PG:::::::::::::::::::A::::T:::::::::::::EQ::::::A:::::::::::
Hmu0772         :E:::::::::::::::T:E::S:::::::::::::::::::::G:E:::::::::::::

consensus       TRLSIEALIDGDMRDAINDAEFEDFAVDFDASPDERRRVAEVAQRALQAHLEDILDRLPP
#oth            ...111.............1.....2.1.2221111........21.121.1221121.1
Hut0610         :::VLA:::::::::::::::::::S:A:TVT::::::::::::KT:E:E:::TF::::D
rrnAC0725       :::::::::::::::::::D:::::E::::::EAD:::::::::S:::S::DGL:EDM::
Hmu0772         :::::::::::::::::::::::::::::E--:::M::::::::::::D:::E:::G:::

consensus       EVARAYQWAVDYSEAHQDRDAHFRELMDAAEDGDAAALADIRAEYKFAALDADDAAEDLF
#oth            2.222.1....1..1.....21..1.22..1...22.1211121.111222221122212
Hut0610         ::REI:D::::L::R:::::P:::::FE::R:::S::RDR:K:::RDVS:S:F::DI:::
rrnAC0725       V:EN::::::::::::::::DY:::::T:::::::D::T:::EA::::EY:EEP:T--:T
Hmu0772         I:::R:::::::::::::::::::D:V:::::::DT::::V:D::::::FTD::V::LFS

consensus       ETERALPYLKTQYARVGVLYDGMLDLYRLAGLDIDDEFARAIVLAIIGAQIWLDDVDDYA
#oth            .1122...2.........1....111..1...11111.111.....1...1........1
Hut0610         :GVET:::::::::::::I::::IEM::R:::PV:EA:K:S:::::::::::::::::::
rrnAC0725       :::KE:::S::::::::::::::::::::::::::::::K::::::::::V::::::::D
Hmu0772         ::::::::M:::::::::::::::::::::::::E:::::::::::V:::::::::::::

consensus       DDRAEGQLTPVTAEYLLAPDDEAAYRRVVDITEQYLDLAKRYATAADSPLTGVAVEYIYR
#oth            ...21..........1..111.1..1.1.111...1...121..12......1.1.....
Hut0610         :::VD::::::::::I::ENT:T::D:I:S:S:::F:::E:F::QT::::::I:T:::::
rrnAC0725       ::::::::::::::::::::::::::::::V:::::::::S:::::::::::::::::::
Hmu0772         :::R::::::::::::::::::::::::::::::::::::E::::V::::::::::::::

consensus       SGDPDVLPGKPA---
#oth            ..1.2....112111
Hut0610         ::::G::::AV:GEE
rrnAC0725       :::::::::::E:::
Hmu0772         ::E:E::::::-:::