3 genomes BUD2541 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2433 - - Hmu0142 Hut1479 - - -

Pairwise sequence scores
Consensus score	1594	Hut1479	rrnAC2433	Hmu0142
1044	Hut1479	1625	962	891
1398	rrnAC2433	962	1595	1217
1388	Hmu0142	891	1217	1588

219 symbols
consensus       --MEDVDREEMPGAIVEEFLAREAGVRALLDDLEKLAIEGRHEEVRDRIRNLAENDEAVF
#oth            1111.112111.1111.11.2..2.1....11.11111..11.1111.111..12.12..
Hut1479         MDQP:EPSG:L::ILA::Y:Q::::::::::::DRQ:L::E::A::E:::G:::T:QG::
rrnAC2433       :::::::G:::::::::A::E::E::::::EE::::T:::::::::::V::::DS::S::
Hmu0142         :::::::::A::R::::::::::R:T:::::::::::::::T::LH:::E::::::::::

consensus       YTVAFSLTNSAQFFGDVEAQLDVTAADRLRDLADTYPALAEPFAIVRTERADDRQNPVTN
#oth            1.1.1..12.2......................111.1.11..21..1.212..2....2
Hut1479         F:I:L:::G:::::::::::::::::::::::::S::::EQ::S:::R:Q:H:::::::G
rrnAC2433       ::::::::::R::::::::::::::::::::::::F:::::::N::::::::::L::::D
Hmu0142         :::::::AD:V::::::::::::::::::::::E:::T::::::V::::LSE::K:::::

consensus       LSYAVSYHRGIESPIVTYRPLSGERELYESRATPSEVLGVAADLVAATTDALDVALDNDH
#oth            211211..111.1.211.211..221...1121.1.1.11.211121.1.1..1.11212
Hut1479         :QTTT:::AEE:L:LIR:TVS::SVD:::GCES:E:I::::TQF:QS:A:S::A:::EEF
rrnAC2433       T:::::::::::::M:::S:::::Q::::::G::::::R::S::TS:::::::::M:::Y
Hmu0142         V::S:A:::::::::::::::::G:::::::::::::::T::::::::::::::::ES::

consensus       SVNTEELSALIDRREELETELSRLRDQLDELRRTPIDDE
#oth            ........2......1..1..11...11.....1.121.
Hut1479         ::::::::N:::::::::S::D:::::I:::::R::G::
rrnAC2433       ::::::::::::::::::::::K::::::::::::VS::
Hmu0142         ::::::::E::::::R::::::::::D::::::::::G: