3 genomes BUD2542 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1913 - - Hmu0663 Hut0552 - - -

Pairwise sequence scores
Consensus score	1418	rrnAC1913	Hmu0663	Hut0552
1147	rrnAC1913	1445	1036	1066
1227	Hmu0663	1036	1390	1118
1290	Hut0552	1066	1118	1436

195 symbols
consensus       -MRGFYIGRFQPYHNGHHTMVERIAA--EVDELVLGIGSAGDSHTDHDPFTAGERIMMIT
#oth            11................11..1.1211............1....2............11
rrnAC1913       ::::::::::::::::::S:::::SE::::::::::::::D::::T::::::::::::::
Hmu0663         :::::::::::::::::::V::E::T::::::::::::::::::::::::::::::::::
Hut0552         MT::::::::::::::::::::::::DG:::::::::::::::::V::::::::::::VN

consensus       KAVAEF----DLPTYVVPIEDLNRNSVWVSHVQSMCPNFDVAYSNNPLVVQLFEEAGIEV
#oth            1..1.11111..2.....1..11.11......1..1.2..1........11.........
rrnAC1913       :::::Y::::::T:::::L::I:::A::::::E::::D::::::::::::R:::::::::
Hmu0663         R::R::ERAN::V::::::::::::::::::::::S:T:::::::::::I::::::::::
Hut0552         ::::::::::::::::::::::D:H:::::::::::::::L:::::::::::::::::::

consensus       RQSRMFDRERLEGSEIRERMIEGDAWRDRVPDAVVEVIEECHGVQRLRTVSDSDVVERWE
#oth            ...2....1.....1..111.1112..1...11...11..21.12.1111121.11..11
rrnAC1913       :::P::::D::::::::Q:::DDES::::::AS:::::::I::IK::QH:::::SL::YA
Hmu0663         :::K::::::::::D:::A::::::::E::::::::T:::V:::::I:::AKD:::::::
Hut0552         :::::::::::::::::::I::::Q::::::::::::L:::N::E::::I:Q::::::::

consensus       AGDEDRPED------
#oth            122122122111111
rrnAC1913       :TG:SL::SLDDLDD
Hmu0663         V:::E----::::::
Hut0552         :KTN:::S:::::::