3 genomes BUD2549 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1878 - - Hmu0828 Hut1881 - - -

Pairwise sequence scores
Consensus score	1036	rrnAC1878	Hut1881	Hmu0828
649	rrnAC1878	1067	424	442
636	Hut1881	424	1087	413
706	Hmu0828	442	413	1019

158 symbols
consensus       MTDADRKRPLLAAVLAFIFPGLGHLYLREWIRALLWLALLFAGASILAPEAAIPAAT--S
#oth            12122211111.21.1121.....2...1.1.21..12.11222222212221122.111
rrnAC1878       :::TG:::::::V:::::::::::F:::K:V:G::::G:::MLSVVFVVTG::DPV:QL:
Hut1881         ----------V:I::SVV::::::V:::::::TG::::::::T:WLVI:PDI::QE::::
Hmu0828         :V:::Q:::::::A:::LS:::::::::::::::::FT:AML:V:::::::TL::::::T

consensus       AEAIMQAS----RARPDEARGAILAIRLLNVVDAYRLARNRNATA-AVEAGRQCPNCGRE
#oth            2...221111111221211222212222.1.1...21.222.211111.2.21..2..2.
rrnAC1878       L:::SSSY::::QS::T:VTIGSVV:TT:::::::W::V:E:Q:Q:E::::MT:::::K:
Hut1881         :::::::::::::NI::::SLL::GL:V:::::::V:::Q::R::D:::S:::::E::H:
Hmu0828         P:::WT::VEMT::LSWQ::::L::VS::S:L::::I:TEI::A:::I:E:Q:::Y::::

consensus       LDED-IDFCHWCTTELEPGEAAQQ--------------
#oth            1.1.111..1..111..222222211111111111111
rrnAC1878       ::::::::::::::Q:::V::D::::::::::::::::
Hut1881         ::D:D:T::P::A::::T:TD:ESESNGATTSESDIDI
Hmu0828         R::::L:::::::A:::-------::::::::::::::