Home |  Text search
3 genomes BUD2550 3 proteins
a Hsa
Halobacterium
sp. NRC-1
b Hma
Haloarcula
marismortui
f Hvo
Haloferax
volcanii
g Hbo
Halogeometricum
borinquense
h Hmu
Halomicrobium
mukohataei
i Hut
Halorhabdus
utahensis
j Hla
Halorubrum
lacusprofundi
q Nph
Natronomonas
pharaonis
x Hwa
Haloquadratum
walsbyi
-

rrnAC3349

- -

Hmu2221

Hut0745

- - -

Pairwise sequence scores
Consensus score5564 Hut0745 rrnAC3349 Hmu2221
3306Hut0745 5496 1933 1984
3483rrnAC3349 1933 8356 2219
3610Hmu2221 1984 2219 5540

1130 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut0745         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC3349       MLLPAFPRLPSKRTCPLVAERTVADLRTVSEHFSAAADTCLVHPGVDPALAEGVEHRARD
Hmu2221         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut0745         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC3349       LPTVFLCAGGDNRRAGPGDCDTGCTGRQRGFTNLFVAVDELRAGRRHHGVVHPLTDEFGV
Hmu2221         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut0745         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC3349       VAVHPRRQRRGVADRLYHLVDAGGLRDDVTRVPRRNHDIGETRDKRDVGVDLRDALVGCD
Hmu2221         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hut0745         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC3349       GEPAHDRGGDVVVVGVSGDNSLALGGDGDQFLAGVAAVVQFVQPNGRCGGAGRGGAKPRC
Hmu2221         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       -----------------------------------MAGYV--------------------
#oth            111111111111111111111111111111111112221111111111111111111111
Hut0745         :::::::::::::::::::::::::::::::::::-----::::::::::::::::::::
rrnAC3349       GADTLIYLNACRRVKCVSDRADGVLVGVFRDVLAAST:::DGHPVSFLQTDNVGRTLQCN
Hmu2221         :::::::::::::::::::::::::::::::::::::T::::::::::::::::::::::

consensus       ------------------------------------LWG---------------------
#oth            111111111111111111111111111111111111212111111111111111111111
Hut0745         ::::::::::::::::::::::::::::::::::::---:::::::::::::::::::::
rrnAC3349       AEHVEAAPEVRTGSRRPDCQHACEFQQCRQKGSEPT::PFPSTENAAQRHNAGKPDVGIG
Hmu2221         ::::::::::::::::::::::::::::::::::::F:::::::::::::::::::::::

consensus       -AMDLDVATIAAAGNAAGALIAAALAVFAWRRRDVPAAAAFAWLAGAAAAWAFCAAAAIL
#oth            1222221112222.21212112212111.1.221111.22121.12.122.212221221
Hut0745         :MVQ:S:SV:V:::S:::GVV::W:T:::::::E:E::TP::L:::::SI:S::Y:G:L:
rrnAC3349       I:::V:I::V:IL:::G::::GF:V:IT:T:YQ:::G:RQYS:::L:GGS:CAVSM:K:I
Hmu2221         :----T:::TLVS:-----::CS:M::::::NH:R::::::G::MV:::::::M:T:RV:

consensus       TANPASAEIADRIARAASSQIAPLWIVFVLVYTGRERWLRP-RLIPLLWIAPAAYLLLLA
#oth            12211212222221121111221.1211111.1.11221111112111121112121.22
Hut0745         :ESAST:S:LLLTSAV:GA:VP:::V::SI::::F::YR:S:V:Y:V::T::L::V::VI
rrnAC3349       AS:::VV:T:YV:::TV::::IA:::IL:::::::RS::::S::::::IV:N:DV::::L
Hmu2221         ::E::::YLF::F::::::ST:::VL::::S:I:::DV:T:::FVG:V::V::G:TA:S:

consensus       TAPRHG--QAEASVQFQTWAGATALAVQRGIAFAADLAISYLFLLAGYGQLARFLVRSRN
#oth            11121.1111222122112212121211212121121221.121121122.21..11111
Hut0745         :::V::::L::TT:::::V::I::PVP:DDT:T::YT:L::::::G::L::V::::AA::
rrnAC3349       GQG:F:::::I:VPVT:--N:V:L::::::V::::T:T::::PV:L:::F:IE::F::G:
Hmu2221         :::L::YV:GPE::WVG::ED:AV:T:TE::PSQI::LYT:VV:A:AFVL:::::::::A

consensus       IYRRQTAVIGAGIALPLIANALYDLGQFPHPGIDLTPAAFALTGLIVGWALFEYDLLSVT
#oth            1..2..111221222.2111111221221..12.2..2112111121..1..1111.111
Hut0745         V::K::V::II:SVF::L:::::VM:FS::::L:P::L::V:::G:::::::::::::IV
rrnAC3349       ::::::::::::T:::M::AL:::::YT:::A::F::GV::VSM:F:::::::DES::::
Hmu2221         :::L:::TVVTA:LV:V:V::ATQFY::S:::V::::::LG::::VL::G::R::::D::

consensus       PLASDILVDELPDPVIVLADDDVIIDHNAAAAAAFGADDLNGRRLDNAAPRLAERIAGDQ
#oth            1.11.21..1.....11.2112112.1.2..2111121212112.2221.2121122122
Hut0745         :::::LV:::::::::::D:E::VV:::T::K::::T:::S::N:WD:V:EFTD:P::::
rrnAC3349       T:SG:T:::N::::::A:N::C::::Y:::::S:L:HPEP::EH:::I::G:S:Q:ERGE
Hmu2221         :::::::::::::::F:::E:GR:L:::R::E:M:D::P:CD:::TTV:::::::LD:SS

consensus       VISASDGP-AEEDTYYNPQTTSITDQHGQERGRLVVLRDVTGQQRRQDRLEALQAATQQF
#oth            12.21122122121111..1.111..1121....1.1.1..1....1..1.......121
Hut0745         L::::STTDTG::GL::::::E:::::N:Y::::I:F:N::A::::L::I:::::::EGL
rrnAC3349       :F:LG:S-:---I:::::::::L:::F:T:::::::::::::::::::::::::::::::
Hmu2221         :Y:R::::::::V::FD::V:::D::::V:::::::::::::::::::::::::::::K:

consensus       IDARIAEAIAEIAVRFADRVLDQNIAAVFL--DENNRLRPAAASDAIERNCDDRLLNLTV
#oth            .2.222121.121.2.1111...21.2.111121122.2.112.221.222222122111
Hut0745         :::::DDE::D:::S:I::I:::E::V:::AT:DD:Q:::::V:S:::SVS:::PP::::
rrnAC3349       :E:ET:::V::M::E::TA:::::A:G:::::E::SV:E::VI:ET::N:VEEE::YGSP
Hmu2221         :T:NSV:R:::LT::::::::::D::::YV::H::D::C:I::::GL::E:T--:TE:::

consensus       EDRGEP-LWSAYEEADIDRVDLRDDGLD-PL-----DNALLLPLGNHGVLAIGSAEP-AF
#oth            1.122211112..2221221222121221.111111122.211112..121.11212121
Hut0745         ::ET--::::R:::::S:G:VTG:WEWG:::ESVDA:EM:V:S::D::LFC:::::T:DY
rrnAC3349       T::P:SK::QT::TGE:QT:S:EQ::::::::::::::::M::::S:::M::TAYGS:T:
Hmu2221         ::::H::IY::::SET:E:A:V::S:TTM:F:::::RYL::V:ID:::::::::R::G::

consensus       ATEDRQFAAILARTTQVALDQVDRERELRQSRRAVRRRREQIEFFNGVLRHNLRNAMQVI
#oth            211.111.2...21.11.111.21.21..11.2212112..21.1..1...211.112..
Hut0745         SRG:::::R:::DG:ET:::R:VH:QQ::EN::I::QHT::L::L:::::::I::G::::
rrnAC3349       :::::RY:::::Q:::::::::E:::::::::SS:Q:::::::::::I:::S:H:::V::
Hmu2221         V:::E:::T:::::::::FT:::::H::::::Q:IE::N::VA::::::::T::::LL::

consensus       RGRANHLRDHV--DDARQRHLDRIRAWCADLSELSERIRAINDTVTASEADRLDRVDLNA
#oth            211.2111111111222..1..1.221122.111112.12.11...11112..1211.22
Hut0745         DSN:DL:GA:IGP:PDS::Y::::::RT:E::D:TA:::S:T::::TDPE:::WP:E:KP
rrnAC3349       ::::E:I::D:::PSSK:::::S:SD::GT:T:M::T::D::N:::::::E:::T:::::
Hmu2221         E:::::::::::::::::::::::VQ::E:::::::E:E:::::::::::Q::::I::GG

consensus       ALRRRIAVLRDRHDNVDIDCACDDELIVRANDLIEDVLDSILRNAVDHNDADAPRVEIEV
#oth            2.2221211222212.21222212122.2..2.2.2.221112..12..1.12.111121
Hut0745         ::TEQ:::IE::::::::EFR:ET:P:::::G:::::FEI::Q:::E:::::R::I::::
rrnAC3349       T:::S:ES::VEY:S:SVS:EL:G:YS:Q::E:L:E::L::::::::::N::T:Q:TVS:
Hmu2221         V:SD:VD::SEDFTD:T::L:V::G:T:L::::V:K:V::VIS::IT::::P::::::TA

consensus       QQAGDWLQVRVADNGPGMSDELKEKVFERNVSASQTAHGFGLYFVSVMMNLYGGTVWFED
#oth            2221.11.111..1...11.11.121...111211.11........1112.1..11.1..
Hut0745         THV::::::H:::::::I::H:::SL::::::V:E:::::::::::LILD:F::E:::::
rrnAC3349       ::::::::::I::D:::::::::T:::::GL:PD:::D:::::::::::E:::::L::::
Hmu2221         SEIA:RV:L:::::::::T::M::T::::::G::::S::::::::::::::::::::I::

consensus       NR------PRGTVAVLEFQRAET-QHAGRDPDNERT--------------
#oth            .211111111.11....1.1.211222222.2222111111111111111
Hut0745         :E::::::::::I::::::::--:------::E---::::::::::::::
rrnAC3349       :::::::::T:::::::L:::V:CSK::D::QSGD:ETAATEAQTKSHNR
Hmu2221         :DIRDEGTR::A:::::::Q::::::TS:S:E::::::::::::::::::