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3 genomes BUD2553 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC1119

 - -

Hmu1314

Hut0541

 - - -

Pairwise sequence scores
Consensus score1640 Hut0541 rrnAC1119 Hmu1314
1099Hut0541 1412 915 948
1393rrnAC1119 915 1691 1239
1389Hmu1314 948 1239 1629 

228 symbols
consensus       --------MYDLSSVLDFDALDEVRPGSSILIAGPAMSGKEALAYDILADGVDRGDGAVV
#oth            111111111111221121111221111212122111.1..12..1.1.1..12212..11
Hut0541         ::::::::----------------------------:T::QG::::::::::SVNQ::II
rrnAC1119       MKTTERQT::::T:::E::::S::::::::::S::::::::R:::::::::L::::::::
Hmu1314         :::::::::::::T::::::::S::::T:L:V::::::::::::M:V:K:::GN:E::::

consensus       VTTGDRAESVVDEFRGRVPDLDDSQLGVIDCRGDNSGTAANQDGNAHTHHVNSPGDLTGI
#oth            .1.1.1.21.11..122.122.111...1..1.121112222211.21...2........
Hut0541         :S::::::T:I:::A:::GS-:EFD::::::A::QQT::P:T:I::F::::G::::::::
rrnAC1119       :::::G:G:::E:::SL::::::::::::::::E-:::DEEVI::::A:::S::::::::
Hmu1314         :::N:::S:::::::TD::EM:::::::V::::::::GE:P:S:-:Y:::::::::::::

consensus       GIGITKALEGLHNAGADQGRLALVSLSTMLTYTDKKTVFKFCHVLSSRLDSAGYIGVFTI
#oth            .....1...1..22.211.....1..........1.....1..1.....11.1.2.1...
Hut0541         :::::E:::A::GR:::R:::::S::::::::::R::::::::::::::EA:E:L:L:::
rrnAC1119       :::::::::::::::NE:::::::::::::::::::::::::::::::::::::::::::
Hmu1314         ::::::::::::KS:R::::::::::::::::::::::::L::I::::::::::V:::::

consensus       DSGAHDDQTLQVIKQAFDGMIEIREADG-QREARVRGLTSEPSEWQEL
#oth            .11...1............1.12.121.12.1...2..111.11.211
Hut0541         :AS:::E::::::::::::::::::T:::::::::::::::::::V::
rrnAC1119       :::::::::::::::::::::DV:D:E:GG:::::L::SG::TD::DI
Hmu1314         :::::::::::::::::::L::F::E:::T:Q:::M::::Q::::K::