3 genomes BUD2562 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0137 - - Hmu2536 Hut0368 - - -

Pairwise sequence scores
Consensus score	2264	Hut0368	rrnAC0137	Hmu2536
1561	Hut0368	2250	1393	1288
1987	rrnAC0137	1393	2452	1641
1820	Hmu2536	1288	1641	2298

336 symbols
consensus       ---------------------MQAAADRDDRGAVAARVTDLIGDTPLLRLD-SFAGNLLG
#oth            1111111111111111111111222222222221122..111.1...12..111121111
Hut0368         :::::::::::::::::::::----------MH::DD::EF::::::::::DGTGTTV:A
rrnAC0137       MYSTHSILGALLRGPIVFSRC::SY:Q:::D:T:P:S::::::::::VC:::::::::::
Hmu2536         ::::::::::::::::::::::T::G:TVE:V:A:E:::::V:E::::W::::::S::Y:

consensus       KVESANPYSVKDRIALAMVEAAAEAGALTDDGMVVEATSGNTGIGLAAVCAARGYDCVLT
#oth            .1.12.........112.1...212.2.11.12.1.1.......1..1....2...1...
Hut0368         ::::L:::::::::GKS:I:::ED::E::::TV:I:P:::::::A::S::::K:::L:::
rrnAC0137       :::A::::::::::::Y:::::::S:D:::::::::::::::::::::::::::::::::
Hmu2536         :L::S:::::::::::::::::R:C:::SA::T:::::::::::::::::::N:::::::

consensus       MPESMSEERRQLLAGLGADLELTPADGGMSGAIERANEL-AEADDAVRARQFENEANPAA
#oth            ..1..1....1..21...1....1.11..1...1..2..1.111111111....1...2.
Hut0368         :::::T::::::::::::E::::D:::::::::D::H::A::H:::FVPQ::::P:::::
rrnAC0137       :::::::::::::S:::::::::::::::::::::::::::D:PGT::::::::::::R:
Hmu2536         ::A:::::::R::RA::::::::::ED::G::::::D:::::::::::::::::::::S:

consensus       HRETTGPEIWADTDGDVDAVVAGVGTGGTITGVSEHLKEDVG-ADVTSVAVEPADSALLS
#oth            ...1....1.11...21..1...1........111211.11111111111...22.21..
Hut0368         :::G::::L::::::EL::F:::I:::::::::GQF:Q:::E::::DVIG:::::::V::
rrnAC0137       ::::::::::::::::::::::::::::::::I::YI::R:::::L:::::::EQ:K:::
Hmu2536         ::::::::::DA:::S::::::::::::::::::::::::R:KTS::::::::DS:R:::

consensus       AADPDSHDIQGIGPGFVPDILRRDLLDEVRTADRAESRAASRRLASEEGIAVGISAGAAL
#oth            12111..1.....1.....1.11..1.1.1.22221121211.11111.22....2...1
Hut0368         GEEAG::G:::::A:::::::EM::::D:V:V::E::I:EA::I:::::L:::::C:::A
rrnAC0137       :::::::::::::::::::::::::I::::::SK:::V:::Q::::QA::M::::S::::
Hmu2536         :D:::::::::::::::::V:::::::::::ITSDDA:EW::::GH:::VL:::::::::

consensus       HAAAEYAAEHPDETVVV-VLPDTGERYLSTDLFE--
#oth            11.2.1.211.111..11..............2111
Hut0368         :::R:V::DY::DA::AT::::::::::::::YADS
rrnAC0137       :::::::T:::E::::::::::::::::::::W:::
Hmu2536         GV:V:::R::::::::::::::::::::::::::::