3 genomes BUD2564 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3487 - - Hmu2187 Hut2038 - - -

Pairwise sequence scores
Consensus score	1008	Hut2038	rrnAC3487	Hmu2187
664	Hut2038	991	438	477
689	rrnAC3487	438	1389	559
770	Hmu2187	477	559	1007

188 symbols
consensus       ------------------------------------------------MQEVTATRDVPA
#oth            111111111111111111111111111111111111111111111111.11.121.111.
Hut2038         ::::::::::::::::::::::::::::::::::::::::::::::::::::::S:::A:
rrnAC3487       MFVYLRWGQETWEAVSHAVNTKSGRTKPQRRTSSGMANAYFAGHWPSG:ER:SL::T:::
Hmu2187         :::::::::::::::::::::::::::::::::::::::::::::::::::::V:::L::

consensus       APEAVRALIEDMEAFMDAAGFDEVTVEGDRIRIQNRVGLFEIELDLEIV-DDDAVLAYEQ
#oth            2..211112112.2..2.....1.111.122212111..112..211..112.11.2...
Hut2038         D::SI::GF:::::::::::::::::::::VTVERAI::A:L::T::::::S:DA:T:::
rrnAC3487       N::T:T:::T:V:P::L::::::::LD::NLG:M::::::::::::::::ET::::R:::
Hmu2187         ::::::S:V:ET:S::S:::::A:R:::ET::::::::::DV::IAG::K::::::::::

consensus       REGIFEDMHTAYRLEAADAGTTITATTQFEAGDLPVIGAALDATVIKRQRKKELNAQFDW
#oth            21.1.12.2.2.21122.21.111.1.2111211112.221.1.111...21..12.111
Hut2038         V::M:NE:T:T:::DG::GE:::::Q::::L:G--:::::::::L:::::T:::ED:LAY
rrnAC3487       :Q::::S:I:E:TV::V::::EV::::EYS:L::::L:EMI:S:::S::::::::K::::
Hmu2187         E:::::::::::H::ET:D::::S:::T:::V:::IV:QV:::::V::::SS::::::::

consensus       LEEQAS--
#oth            .1122111
Hut2038         :::T:TGT
rrnAC3487       :V::V:::
Hmu2187         ::AEL:::