3 genomes BUD2608 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0307 HVO_2530 - - - hla1700 - -

Pairwise sequence scores
Consensus score	3419	rrnAC0307	HVO_2530	hla1700
3123	rrnAC0307	3419	2867	2891
3099	HVO_2530	2867	3434	2896
3145	hla1700	2891	2896	3422

443 symbols
consensus       --MARFLFVSADAALIADLAWQVRREGHDVRYYIEAESDREIGDGFVPKTDDWRAEVEWA
#oth            11222...1.1.1...2.1....21.....1.....11.1..11..........1111..
rrnAC0307       ::::N:::C:L:::::G:I::::TE:::::::::::N::Q::A:::::::::::EDLD::
HVO_2530        ::-MK::::::::::::::::::::::::::::::::H::::::::::::::::::::::
hla1700         MDTE::::::::T:::T::::::H::::::K::::::::::::E::::::::::::::::

consensus       DVIIFDDIWVGSDIGTGALARELREEGHAVVGGTPNTDALEEDRGYAMEILEDHGVNTVE
#oth            ..11.........1...11.2...11.1..........2.........11..1.....1.
rrnAC0307       ::V::::::::::::::EI:::::A:::::::::::::::::::::::::::::::::I:
HVO_2530        :::V:::::::::V::::::Q:::::::::::::::::R:::::::::DV::E:::::::
hla1700         ::::::::::::::::::::E::::Q:K::::::::::H:::::::::::::::::::::

consensus       HHVFRDFDAGIRHVQENPAPYVIKPLGEVQNVKRLLYVGNEDDGSDVVDVLRAYKKAWGH
#oth            111.2...1..21.11.1.......................1....1.1..1...1....
rrnAC0307       ::::E::::::Q::::::::::::::::::::::::::::::::::I:::::::::::::
HVO_2530        QR::::::E::EY:RR:R:::::::::::::::::::::::E::::::E::::::Q::::
hla1700         ::I:H::::::::::::::::::::::::::::::::::::::::::::::N::::::::

consensus       RMKGFQLQRKVEGVEIAVCGFFNGNEFVDPVNFNFEHKKLFPGNIGPSTGEMGTSMFWAG
#oth            ...........1...1.1....1.22.111..............................
rrnAC0307       :::::::::::A::::::::::::DS::E:::::::::::::::::::::::::::::::
HVO_2530        ::::::::::::::::::::::D:ET::::::::::::::::::::::::::::::::::
hla1700         :::::::::::::::V:I:::::::::I:Q::::::::::::::::::::::::::::::

consensus       RNRLFEETLGKLEGWLANEGYVGSIDINCIVNEHGIYPLEFTPRFGYPTIALQEESFESS
#oth            1.2..1..1.11.1...2........1.....12................1.....1..1
rrnAC0307       ::E::::::::V:::::D::::::::::::::DS:::::::::::::::::::::::::E
HVO_2530        ::::::::::R::P:::E::::::::::::::::::::::::::::::::T:::::::::
hla1700         Q:K::K::F:::::::::::::::::L::::::T::::::::::::::::::::::I:::

consensus       TGQFFADLAHGNDPELDVHRGYQIAVRIVLPPFPFDDEKTYDENSRNAAVVFETDSREGI
#oth            .11..2...1.11.112..2...1...1.......1..1..............11..1.1
rrnAC0307       :::::L:::::R::D:K::::::V:::V::::::::::E::::::::::::::S::::::
HVO_2530        :A:::F::::::::::S::G:::::::::::::::T:::::::::::::::::::::::V
hla1700         ::A::::::R::E::V:::N::::::::::::::::::::::::::::::::::E::D::

consensus       HIEDAKRVDGQWRVAGESGMPLVVTGKGETMQAAREQAYDRVDDIVIPNRYYRDDIGERW
#oth            .1....1..1...1..11.1.1......1...1..1...1.1.1.11..2..........
rrnAC0307       :::::::::E:::::::::::::::::::::::::::::K:::A:R::::::::::::::
HVO_2530        ::::::L::::::A:::::I::::::::::::E::K:::::::::::::L::::::::::
hla1700         :L::::::::::::::NN:::I::::::D::::::::::::I::::M::M::::::::::

consensus       IDGDGDRLQAWGYLGPAL-----
#oth            ........1.......1211111
rrnAC0307       :::::::::::::::::::::::
HVO_2530        ::::::::L::::::::SERKIS
hla1700         ::::::::::::::::--:::::