3 genomes BUD2621 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2468 - Hbo0368 - - hla2181 - -

Pairwise sequence scores
Consensus score	2171	Hbo0368	hla2181	rrnAC2468
1701	Hbo0368	2263	1354	1501
1717	hla2181	1354	2316	1566
1922	rrnAC2468	1501	1566	2190

332 symbols
consensus       -MTIL---------QYLANGLVFSSIIVLGSIGLSLVYSIADFANFAHGDTMTIGAYGAL
#oth            1112.11111111111.1..1....1.1.1.......................2..11.1
Hbo0368         :::L:VPLQGLNPA:F:V::I::::V:::A:::::::::::::::::::::::V::F:::
hla2181         :::V::::::::::G::::::::::::::::::::::::::::::::::::::::::T::
rrnAC2468       MAQ::::::::::::::::::::::::I:::::::::::::::::::::::::L:::::F

consensus       VAFGVLG-GLGGA-VLGLPIGFFLALAVGMAAAAVVAVLTEILIYRPLDTDSIGLLITSI
#oth            121.1211111.2111.1.211.11.2..1.2....1.1.1211.2...11..1......
Hbo0368         ASA:::APAME:ILIF:F:VWM:V::L:::::::::V::::FV:::::::G::E::::::
hla2181         :T::AV:::::::::::::Y::::::V::I:V::::::G::K:::E:::V::::::::::
rrnAC2468       :::::F::::::T:::::::::::S::::::L::::::::H::V:K::::::::::::::

consensus       GVAFAYRAVIQAAFGTGFLRYDIQREGPIPVLRDLLNVAVTQRDVAIVVSAAVLVAGLHL
#oth            .1.12....1122..111211112121..11.2222111..211.1111..1...21..1
Hbo0368         :::L::::::FL:::::SS::GVP:::::::::E:F:I:::P:Q:VA::::L:::GT:::
hla2181         :I::I::::::IR::S::T:F:::PLR::ES:VP-YG:R::LH:::::G::::::V:::V
rrnAC2468       ::::V::::L::T:::D::Q:::S:S::::::L:T::::::::::::I::::::::::::

consensus       LLQYTTLGRKMRATADNPDLARVSGIRTKRVILAMWVIGAALAAAGGVFLGLENQLDPRM
#oth            1..1.1.......1..1.1.........11.1121..1.21..1......1.22112..1
Hbo0368         V:::::::::::::::D:N::::::::::E::I::::::G:::::::::::::TLIH:::
hla2181         :::::D:::::::M:::::::::::::::::K:WT:::::G::G::::::::F:::S:::
rrnAC2468       :::R::::::::::::::::::::::::D::::V:::V:S::::::::::A:YS:::::I

consensus       GFNILLVVFAAVILGGIGSVYGAMLGGLLIGMLNELTPLFSNV--GLP------------
#oth            ..11..11................1..11..1121...11.2.1111.111111111111
Hbo0368         ::D:::I:::::::::::::::::::::V::L:Y:::::::L::::I:::::::::::::
hla2181         :::L:::I::::::::::::::::A::F::::I:Q:::F::::VEA::IAPNWLETVLEN
rrnAC2468       :::::::::::::::::::::::::::::::::H:::::L:D::::::::::::::::::

consensus       -ISNEYAAAVAFVIMVVVLLVRPRGIAGD-AT
#oth            11121..2.1......11.....2....111.
Hbo0368         ::GT:::::::::::::I:::::Q::::::::
hla2181         L::I:::N:I:::::::::::::N::::EG::
rrnAC2468       :V::A::P::::::::A:::::::::::::M: