3 genomes BUD2622 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0396 - Hbo2856 - - hla2169 - -

Pairwise sequence scores
Consensus score	2263	hla2169	Hbo2856	rrnAC0396
1409	hla2169	2409	759	837
1348	Hbo2856	759	2265	945
1515	rrnAC0396	837	945	2251

333 symbols
consensus       MPERENRADGGRDGD-------PDGGVALDGAAAAREADAGTEGSTATDAADEAAAAALA
#oth            .2.22222.21122211111111...1222112122222221111121122.22221212
hla2169         ::::GTVE:::::::AARTEPT::::I:::::S::SG:E:S:A:::DA:DS:T:H::DAD
Hbo2856         :T:GP::::S::SHE:::::::T::::TTT:D:NVT:PTDVA:APEV:EST:GQDSS::R
rrnAC0396       :S:D:SST:PA----::::::::::::VSVD:P:T:LH:G:::::::::::::S:L:R::

consensus       DIS--------IATIARREFRLAVRRRWALGLAALFALFAFLIVQFGASSVGPGRADAVV
#oth            221111111112111.11.2..21.21..111121.21.221212.11.1.1.21211.1
hla2169         S::IPLPRPGIV:R:::::T::TT::G:::::TVV::A:G::LAT:SG:G:A:TGYEP::
Hbo2856         Q--:::::::::::V:GM::::S::N:::VA:::::T:::S:::G::::::::V:::::I
rrnAC0396       :S:::::::::LL::::::Y:::::S:::::V:L::G::TTAV::::::::::::F::::

consensus       ASIAELATYLVPLAALAFGHDAVVGAAERGRLDIVLALPVSRARVVVGSAAGRAAVLGAA
#oth            11211.111.1..1..11.21.1...2...2.22111...1111111.222...11.22.
hla2169         ::YV::::F:::::::::::G:::::::::::GV::T::::::ETAI:VF::::::::S:
Hbo2856         V:M:S:::::L:::::V::F::::::E:::W::::F:::::::::::::YL:::VT:V::
rrnAC0396       :T::::GV:::::T:::V:Y::I:::D:::S:ELM:::::TKG:::::T:I::::::SG:

consensus       MILGFGIGGLLLLREAGLANTGQYATFLLAAVALGCALLGVGVGVSAVARTKTHALGAAL
#oth            221..12111.1212212.22221.111112.121212.111.21.211211.1..11..
hla2169         V:::::VP:::::::Y:::GWPTF:W::F:T::VAV::::I:::I::L:P:S:M::AG::
Hbo2856         TSI::::::I::FSV:SS:::VL::::::GS::::LGF:A:::F::S:VGE:::::::::
rrnAC0396       :L:::VP:A::TV:YI:F:SV:::::VA::::LT:::M:::A:L::T:::::::::::::

consensus       LVWAWVALGHDLLALGAVAGLDLANGAIAVAVLANPVSCFRVLALAQIDAGGGGLAAVLA
#oth            11.2.1112...1.1.21.121122112111112...121.111.12212211.112112
hla2169         ::::::::V:::::M:VL:A::G:::FV::::A:::::TY:L::::PT::::A::::A:-
Hbo2856         :::V:FVF::::::::L:::SK:PQS:LS:M::S::::V:::FV:SG::ST:::::T:VG
rrnAC0396       AI:L::::L:::V:::::::F::GS::::A:I:L:::D:::::::::VNVVA::FGS:::

consensus       DAGLSMPLLAAALLAWVVVPVAVAARAIRRRRL
#oth            221.12121122122..111.21..21212111
hla2169         :G:::VGV:VGV::G::ALG:V:::V:M:VK:I
Hbo2856         EST:::::::V:ATV:::::::A::::V:H:S:
rrnAC0396       Q:::TT:MV::G:V:::::::G:::KL:Q::::