3 genomes BUD2624 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0358 - Hbo3338 - - hla0701 - -

Pairwise sequence scores
Consensus score	2848	rrnAC0358	Hbo3338	hla0701
962	rrnAC0358	2911	579	607
2238	Hbo3338	579	2808	2028
2411	hla0701	607	2028	2850

393 symbols
consensus       -MRDDK----LNRREFLYGAGTAGIAGLAGCSGDSGDGGDGGGGGDGGGESDGSDGSDGG
#oth            1121.2111122..2..112111.12.....1122.1211121.111112111.111.11
rrnAC0358       MF:N::HSLVSK::S::KMV::::L::::::G::::-S::::::::S::::G:::::::S
Hbo3338         ::V::T:::::Q::::::::T::::V::::::SST::TSNSP:::S:::SG:Q:GTG:S:
hla0701         ::T::S::::V:::K::::T:AV::T:::::::G-::::::SD:S::SDG::::::::::

consensus       GGDLSLRIGTS--AGGTQAVGLAVERAVSQESDNLSYSTQESPGYVGTIRRMAQNQFNAG
#oth            1.21.111...11111.221.1.11121.12.12111112111.11111111.1211221
rrnAC0358       ::ST:WT::::GPETA:H:S:V:MAQLI:DK:S:I:M:A:TTG:TAANP:LI::GDIDVA
Hbo3338         ::E::::::::::::::KN:::::::T:::H::K:D:A:V:::::::::Y::::D::SG:
hla0701         S::::::V::::::::::D::::::::::::::T:::::I:::::::::::::N::::::

consensus       ITDNNSLAKANDGRGAFEEQ-GVDRIPQYGFYAFPYSIYLIARDG---TGIETFDDLAGK
#oth            111111121122121212121111211211.1111.11.111.1111111...11.1111
rrnAC0358       QSTDWAV:RS:S:GDPYG:PV:KTMTQVLP:MTLE:--::VR:TDDALA::::VS:IPQD
Hbo3338         :::::::T::LTD::S:SDK:S::E::Y:::::::::::::::::::::D::::::::::
hla0701         :::::::S::I::T:::::::::::::::::::::::::I::::::::::::::::::::

consensus       NVYP---AEPGYSTRATTLDVWSQDPTANIYDQMNIQNMGVGDAPGAMEEGRIDAAIAYG
#oth            1111111111.1111111..1111211221111111.1.11111111111.11.1211..
rrnAC0358       GSVSMAFGQR:GTNFFAG::GFRLSGID:VE:KYDL:S:SW::QGAQFAD::L:MMMV::
Hbo3338         :::::::::::::::::::::::::::KE::E::::::::::::::::::::::::::::
hla0701         ::::::::::::::::::::::::E:::D::::::::::::DS::::::::N:::C::::

consensus       TPGARYTGWVQEAAARADVHYVE---PTDALANSAAPYPGAGSGTISMADWDI-DQDIGT
#oth            111221..111.22112.111.11111111.22.222.211112121221.22121..11
rrnAC0358       VSREVL:::A:::S:Q:::AV:NWEFDQSD::::DL::TYIETPASL---::-:G:::RM
Hbo3338         ::::G:::::T:YD::L::::::::::::::KE:V:T:S::::S::::S::SM:Q:::::
hla0701         :::V::::F:::I:S:I:I::::::::::::RQ::ES::::::::T:Y:::P:A:A::::

consensus       DEIFAWNLEVNYTFNPEANADAVYELCRVVDEHNDAVNEAEAQFN----DFESTEDMLGS
#oth            .121212111111.21.112111..11.1.1.1112.1.1111111111..111111.1.
rrnAC0358       :S:P:VGVGYETI:PA:VSEELG::FV:T:M:DIG::R::SSVLSRAGP::-AQ:FL:P:
Hbo3338         ::V:T:D:::::::T::::::::::::::::::::V::::::::::::::::::A:::::
hla0701         ::L:H::::::::::::::P:::::::::::::::T:::G::::::::::::::::::::

consensus       ARENIPVHPGAAKYYKENDAWDDNLTEGEEA--
#oth            11111...1..21...1121.112.12112211
rrnAC0358       P--:A::::::E:::::QGL:K:G::TL::YEG
Hbo3338         :::K::::::::::::::E:::ES:SV::--::
hla0701         ::::::::R::VQ:::D:::::::::::DS:::