3 genomes BUD2625 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0394 - Hbo2855 - - hla2168 - -

Pairwise sequence scores
Consensus score	2382	rrnAC0394	hla2168	Hbo2855
1738	rrnAC0394	2573	836	1208
1138	hla2168	836	1833	936
1735	Hbo2855	1208	936	2376

354 symbols
consensus       ----------------MNAIDVTDVHRAYGDVAALDGLSLSVERGATLGLLGTNGAGKST
#oth            1111111111111111112..111.222.1..2....11111.2.212.12.......1.
rrnAC0394       MPARSPNHPTRTGGAT::V:::D::SK:::::Q::::::::::::::::VF:::::::T:
hla2168         ::::::::::::::::-MR::I:N:::R:D:::::::VDFT::S:EAY::V:::::::::
Hbo2855         :::::::::::::::::::::::::TQT::::T::::::::I:P:T:F::::::::::::

consensus       LFKLIVGHNRPDEGAVSVAGADVRTAGPAIREAVGYLPEHAGFPPALTGREILAFHARMR
#oth            ..1.21.12...1.211.11211212.211.12111...11....21....2.2...21.
rrnAC0394       ::::L::L::::::S:::::::-P:D:T:V::R:R::::::::::S:::::::S::::::
hla2168         ::G::A::D::::::IT:GDR:::EL:WR::::I:V:::DP::::GE::::T:::::DV:
Hbo2855         ::::V:::V:::T:T:::::QN:E:::::::SE::::::::::::::::::V:E:::K::

consensus       GI--PREDADDRIERALATVGLADAADRRIGGYSNGMNRRLGLATALLARPAVLLLDEPT
#oth            1211221.11211122121...2..1..121...1..1.....11..122.21.1.....
rrnAC0394       SV::::::R:HHV::I:H:::::::::::V:::::::::::::G:::VGE::::I:::::
hla2168         ::GASP:::AE::AG:A:::::G::I::P:D:::K::R::::::A::::N:S::::::::
Hbo2855         :L::--D:::::::SV:SL:::R::::::T::::::::::::::::::S::TI:::::::

consensus       AGLDPRGVAAFHEVVERLAAETDVTIVLSSHALREAERLCDAVGIIADGRLAAAGPVEEL
#oth            .....2.11.111.1111121111.11211.1.2.2111.12111221.11212.2111.
rrnAC0394       :::::D:IR:::::::A::::::::::F:::::G:IQ:::S:AV:::::QV:T:::::::
hla2168         :::::N::::LR::LT:VRE::G:::LMAT::::::::V::R::VLD::::V:E:TPD::
Hbo2855         ::::::::::::D::::::RDD:L:V:::::V:S:V:K:::T:::VHN:::R:G:S::A:

consensus       RRDAADEVRVRLRLADAAAAADAASDLDEHDA-AIRSRSNADFTARCSPADAPDLLDALG
#oth            211221212122211222222122222222221222121222212222222222112222
rrnAC0394       ::A:::::T:S:S::SE:::S:V:T::GTSE:VSTV:::G::V:::TT::::Y:::T:V:
hla2168         GA:-----------------------------:---------------------------
Hbo2855         K::LI:G::::V:::::GSM:::T:VV::::G:::::Q::RE::VE::SEVP:G:::D:M

consensus       DAANIDRFEVREPGLEAAFEEALGGANGDEQGRDA-----------EDQEREKA
#oth            22122222112.1...21.2222.1222222.2.11111111111112222122
rrnAC0394       EG:::::::::::::::::H::V:AD:::GS:S:STASAAAAEAAT::SGG:P:
hla2168         ----------H:D:::G::VSLT::------:::::::::::::::--------
Hbo2855         :::SLSGY::T:::::QV::HT::::SKK:::E::::::::::::::E:::::T