3 genomes BUD2626 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2546 - Hbo2046 - - hla1926 - -

Pairwise sequence scores
Consensus score	2097	hla1926	rrnAC2546	Hbo2046
880	hla1926	1957	422	393
1365	rrnAC2546	422	2108	853
1294	Hbo2046	393	853	2344

338 symbols
consensus       ---MAQFTARIADG--------WRRAADHLS----LALVPIATALLNTDDILAAARIDGA
#oth            111122112121..111111111212211111111.21..221.1221121122222112
hla1926         ::::::PSNGPS::APSPTEPIFE:TFA:::RLLP:::::L:::::::S:L:::::T::I
rrnAC2546       ::::PT::::L::::::::::::KK:G::I::::::I::::LL:VMQ::S:RQVLTY:::
Hbo2046         VASSIP::D::::::::::::::::S::A:W:::::VF::VV:::FSV:K::RITL:NRF

consensus       HIGAKF-NLPAPREDIWRFVNLPQSG---VHANFGLLESAPLAVPILAALVVVRAALSAG
#oth            11121.122.222222.2..22.21.111.2222.222122211121222111222.11.
hla1926         S:R:S::--:IY:Y:L:S::ES:TG:GLS:SVP::T:::LV:L::L:G:Y:::SG:::::
rrnAC2546       :::I:::GV::SVVT::Q::S::G::::::T::V::PL:::F::VVIPGVL:L::G::::
Hbo2046         :V:F::L:::S:I:SV:::::V:::::::::IDS:P------:I::::V::L:TMF:LG:

consensus       YFGSIAARLLDADEGRFDFAADVRAYAVPMAVIAALPIVALVAVALGLLGFGSL-EGNAI
#oth            .1.1.122.122211211.222121121112122.1121211211121111122111222
hla1926         ::::::DG:---TT:::::V:G::RF::R:IALE::V::::A::F:P::-----:----V
rrnAC2546       :::T:::E::GRH::---::MS:L::F::FL::T:::Y:I::PL::::::::::G::G::
Hbo2046         :L:::R-:::::::DQ:::TH:AF::LG::::W::V:SLVT:S::MLAG:::TV::::TL

consensus       VPLVFVI-IAAALVAGYLFFATPYLVVLRRTGIVAAARGSYQLAVRGGPYASYALGYLGF
#oth            1111.121.2111121...2111111..121.212.1.1112.11211.121121.1221
hla1926         :::L::VA:L::::LS::::P:V:IL::EDR::ES:::RARE:VR:HQ:-----::FFL:
rrnAC2546       :GA::LL::P:FVA:::::W::::::::::::F::::::::::::D::::L::TV::::L
Hbo2046         L:::::::::G:::F::::Y:A:F:::::E::L:D:L::::H:::S:::::::::::VF:

consensus       VAVVSAVASA---IVVNAGAVGLLIGIVGGGRLGLALNIATMRFVADIDDQCPTACEW--
#oth            121.11121211121112121.11211121121..12121.111..12111211221111
hla1926         ::::T::C:VPLSLLTH::PI:AVLAA:VAAPI:::F:V::ALK::KMA:IETVE---::
rrnAC2546       :LL:::::T::::V:::VS::::::::::::F:::V:::T:::::::::P:::::G::::
Hbo2046         SF:::GAL:L:::::::L:I::::V::PL:::::::TTT::::::::V:::S::L:::DD

consensus       ----PEQQRAGDQASNA---------------------
#oth            11111212221222212111111111111111111111
hla1926         ::::-------------:::::::::::::::::::::
rrnAC2546       :::::::H:S::SVV:T:::::::::::::::::::::
Hbo2046         GGDD:F::N::E:::::YGKASNADDRLGDEFDRDGTR