3 genomes BUD2628 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC0391 - Hbo2853 - - hla2166 - -

Pairwise sequence scores
Consensus score	2005	hla2166	rrnAC0391	Hbo2853
1338	hla2166	2156	933	957
1395	rrnAC0391	933	2043	1099
1506	Hbo2853	957	1099	1952

289 symbols
consensus       MNRPGRDRFAELRRALPVGAAALFVAALLLPMWRIAMDAVQYPNEGLRVSLYAYPRLGGD
#oth            122122121211..2..12..21112..12.1.1.222.1...212.211.....212..
hla2166         -MTASL::LT::::::::T:::M::V:::V:V::::FE:P:::-:::L:E::::::::::
rrnAC0391       :Q::TI:D:R:I::G::AV::L::::::AF:::::SV::::::STT:::::::::H:T::
Hbo2853         ::L:::TE::Q:::L::::::V:LLG:::::::S:E:H:::::::P:HL::::::QVS::

consensus       FAEIARLNHYVGFYYPDPVFVDPNYAVHPRAIDVPEWSLGPVAFIGVAAASVFVALAPTA
#oth            12.221..1.1...1....112..121112..11...1...11.21.1121....1...2
hla2166         Y::VQA:::::::::::::::::::::::D::AA:::I::::V:LA::::G::::::::D
rrnAC0391       :I:M::::::::::F::::L:E::FP:EEN:::::::::::::::::SLL:::::V:::V
Hbo2853         :V::H:::K:I:::::::::WQ:::EP::::::::::::::L::V::::T::::::::::

consensus       RKLRRGLLGQLAGAVAVFAGLLADIQYRLFQAGHTLDPDAPVMGVAGFTPPLLGQYQVAN
#oth            1..11..22.12.1121.2121.11.1..21...1.112...1..21.....1.2.21..
hla2166         ::::L:::::::::TVA:V:TF:IV:::::::::A:GES:::V::RE:::::::G:EI::
rrnAC0391       D::K:::KY:FG:T:L::TVM::::::::WE:::::::G:::::::::::::W:::::::
Hbo2853         :::::::TL::V::::::::::::::F::Y:::::::::::::::E::::::::T:S:::

consensus       ITSVSRFGAGAYLAAIAIGLLVVSYALRDSAVTLGEAPGRARNRLTG---ANRDRDGDGD
#oth            .11111..2.1.1122121..1.1.22.1121.22.2.112.1111.1112221211121
hla2166         :SG:AW::P:G:::G:GFL::::A:L::::Q::V::::::V:D::S::::G:E:G::::E
rrnAC0391       ::::::::L:::M::T:V:::A:::YY::Q:A:FS:L:A:F::G:::LPD:V::::::T:
Hbo2853         :::Y:::::::::TML::::::::::V:N:T:::W:V::Y::::F:::::---------:

consensus       DEQ-----------------------DAPTHDTTGERASAPDAPRTGRR
#oth            1.21111111111111111111111112.1221122211211212.122
hla2166         P::IGPAAEEIAEAQTAANPESVSTP:G::S:DS:TDG:TQNG:K::VN
rrnAC0391       ::E::::::::::::::::::::::::::H:P::T--:AE::K:E:HS-
Hbo2853         ::T:::::::::::::::::::::::TE::TG::S::::::::S:::::