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3 genomes BUD2666 4 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

rrnAC0977

 - -

Hmu1672

 -

hla1520

hla1650

 - -

Pairwise sequence scores
Consensus score1251 hla1520 hla1650 Hmu1672 rrnAC0977
1120hla1520 1233 1233 605 610
1119hla1650 1233 1776 604 610
736Hmu1672 605 604 1367 678
732rrnAC0977 610 610 678 1263 

240 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
hla1520         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
hla1650         MARVERAIHHDLPHPAESDDAEFHARGVATGRRSGSGSGLAPALHRFGTLALAPDEGRPN
Hmu1672         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC0977       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       --------MDMIRVTESDLDWTDHERGDRRFRRKQLAEAADGDRIGCSLYELPAGARSWP
#oth            1111111123222.2121...11111.112.1111222.121221.1...1211.112.1
hla1520         ::::::::--:::::::::::::T:::ET:::::::::::::::::::::::::::K:::
hla1650         DFARGVRVVP:::::::::::::T:::ET:::::::::::::::::::::::::::K:::
Hmu1672         ::::::::::DRI:DSDS:::EA:DH:::A::GRRFTR:SAASEL::::::IEP:K:G::
rrnAC0977       :::::::::SNGP:N:A::::::::H:::T:K:::IGD::G:EQL:A:::AV:P:K:L:V

consensus       YHYHEANEEAIFVLSGSATLRHDGETVR--IEAGDYVAFPADESGAHRVVNAGDDSLRYL
#oth            2...11....11.12.11..11111221221.1..1111.11.211.11211.2121.1.
hla1520         ::::T::::::Y:::::::::::::::::::::::::::::::::::::::E::::V:::
hla1650         ::::T::::::Y:::::::::::::::::::::::::::::::::::::::E::::V:::
Hmu1672         A::::G::::M:::D:::::WLG:DREERDL::::FAV::RG:D:Q:E-LE::P:G::::
rrnAC0977       R::::G:::::::RG:TG:::LGP:ADEHAL:P:::::L::G:ES::E-IE::ESE::L:

consensus       AMSTMTEPDITVYPDSETFGVFAGSPPGGRE-ERSLSGYLDIDAEVDYW---------EE
#oth            11...21..1.....2121.111......2121.2..2.11211112..111111111.1
hla1520         :::::::::V::::::::::::V::::::::::::::::YQ::DT::::::::::::::L
hla1650         :::::::::V::::::::::::V::::::::::::::::YQ::DT::::::::::::::L
Hmu1672         :::::YD::::::::NDAV::::::::::D:S::R::K:::A::::P::DGGDGGSQR::
rrnAC0977       MV:::E:::::::::R:MV:LY:::::::EKAD:T::T:::RN::KE:::::::::::::