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3 genomes BUD2669 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
-

pNG7166

 - -

Hmu0520

 -

hla0371

 - -

Pairwise sequence scores
Consensus score1229 Hmu0520 pNG7166 hla0371
810Hmu0520 1518 434 486
699pNG7166 434 2531 450
827hla0371 486 450 1200 

372 symbols
consensus       ------------------------------MGDDGVGIS--------QLDLLQGSVLLLV
#oth            1111111111111111111111111111112122211111111111121212111112.1
Hmu0520         VADLPELYAKPSGQYEAVVGPVASVRVLSRF:ISP::V:PKLSLAGK:::::::::FV::
pNG7166         ::::::::::::::::::::::::::::::-MKVS:::T::::::::T:H:S:K:A:::L
hla0371         :::::::::::::::::::::::::::::::::::LT::::::::::GPSTVR:A::M::

consensus       IGLAAAGYGAYDYQQQSQAVDDAVAVDATITDLDVERIDAGRG-TD--YEPTARFTYQYD
#oth            212122.1.1.1.2..111121112.2.....2211222211111.11.1.12211.212
Hmu0520         V:V:I::::::E::::A:TLS:TTT:E:::::TG::T:PQR::R:::::::::T:E::F:
pNG7166         LATGLL:F:G:::V:::::::N::::Q:::::SS:D:M:G::::I::::::EIQY::K:Q
hla0371         :::::T:::::::T:::N::E:::E:::::::::I:STS::SS:::VS:R::V::::E:E

consensus       GTTYTSNNVFPSTIATNYDTRSAAESVVEEYEVGETATAYVNPADPDAAFLERERSDAPL
#oth            .11.112211..11212.111.2.111111.1111111...2.11.121..2212122.1
Hmu0520         :::::G:DIR::S:::D::::::::DALS:::::::V:::::::S:GQ::::N:P::G:A
pNG7166         :E::::EQ:::::GVRT:SD::R::::::S::P:T::R:::S:::::D:::I:::TPF::
hla0371         ::A:A:T:::::::S:::::E:T:R::::::A:D:S:::::D:S::::G::KHRT:S:::

consensus       RAITIGGFLALVG----------GASALRRARDADHA-----------------------
#oth            21111.112211.11111111111211112222222211111111111111111111111
Hmu0520         KFVVV::VT::::::::::::::A:::::SGG::::G:::::::::::::::::::::::
pNG7166         :::::::::SVI:VLAGLGPKNP:QQE::P:NEMQS:QHETWVDSHGETLHRLSKQGLGV
hla0371         L:::::L:FV::::::::::::::S::VK:T:G----:::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hmu0520         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
pNG7166         CFVGFWLSMVALVFGLLNTPGEFGGPPQEIQAELLGPIGLPMLAGFSFWVGMILSLCLYG
hla0371         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
Hmu0520         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
pNG7166         GWSFAEYQQLRRRLPDPKPPSPFRHPSRLITILGTEDNDLSEYGRRVRRTGWALMIAAGM
hla0371         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ------------
#oth            111111111111
Hmu0520         ::::::::::::
pNG7166         TAVLVHLLYIAS
hla0371         ::::::::::::