3 genomes BUD2676 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1644 - - Hmu0855 - hla0543 - -

Pairwise sequence scores
Consensus score	1467	hla0543	rrnAC1644	Hmu0855
614	hla0543	1277	242	252
1001	rrnAC1644	242	2030	673
846	Hmu0855	252	673	1380

278 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
hla0543         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC1644       MRRAALSFSVIISLIGHHLSLSLPVGTESVVLKAFGKIRRQRGCAGACGAARARAEVAPL
Hmu0855         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       ----------------MNARELASARQFAGRDRRRKRLLRAVAAALVFATAAFHLWWGLP
#oth            111111111111111122222222222221212122111.11..211121..2.11.12.
hla0543         :::::::::::::::::::T:SG:D:::T:::TS::::::::::QTAALS::V:FL:AW:
rrnAC1644       SIRQRSNASGQLWHHSSLR:T::T:SPT::M:::TTK:::GT::::::::::::::::::
Hmu0855         ::::::::::::::::---------------MD:SV:IA:::::G:::V:::Y:::::F:

consensus       RLIIYAQALEGLAGRGLPPDPRPFLFVAFAAVLLAGPYLVTRAVATLR-----RAYAAGA
#oth            .222121222212211111.1..11.111121..1.11111121211.1111112.21.1
hla0543         ::-------------AE:A:A::YV:------::G:AFT:AI::::::ADEYR:L::L::
rrnAC1644       :S::::::M:::F::::::::::::::::::::::::::I::G:IG:::::::N::I::T
Hmu0855         :MLV:L:G:GS::S:::I::::::::::::L:::::::::::DYL:V:::::::G:L:::

consensus       GLMVASIAAWVAWHATGHGAFLA-GDPAPISAKGGHHGGGAALLILDHRNTEPTEGVVKR
#oth            111111211112..21.11.1.21121112222.1122.2212111112212.1121112
hla0543         :TLA:FL:GYAG::GG:TA:A:::S::LA:V:::AEVV:V::F:A:-Y:LAP::SV::E:
rrnAC1644       L::::::::::F::::::::::VD:FS::S:GS::::::ST:::::::F::::::SA::T
Hmu0855         ::::L:FL::::::Q:::::::T::L:::--ET:::TH::VLYT:Y::YV:T:I:::I:S

consensus       QEALAAGILATLLRRDPAANAGEARGDVEASNDRAARA
#oth            2.211112222112211.22211221212212122212
hla0543         ::EAES:-------EEE:T:G:::I::TT::::ED:::
rrnAC1644       L:::::A::V:::WK:::IMP::R:DS::S:TSSES--
Hmu0855         V:L::::LF:W::::::::S:STDD:E:PVGG:::T:E