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3 genomes BUD2699 3 proteins
a Hsa
Halobacterium
sp. NRC-1		 b Hma
Haloarcula
marismortui		 f Hvo
Haloferax
volcanii		 g Hbo
Halogeometricum
borinquense		 h Hmu
Halomicrobium
mukohataei		 i Hut
Halorhabdus
utahensis		 j Hla
Halorubrum
lacusprofundi		 q Nph
Natronomonas
pharaonis		 x Hwa
Haloquadratum
walsbyi
- - - -

Hmu2121

Hut1022

hla1898

 - -

Pairwise sequence scores
Consensus score1937 Hmu2121 Hut1022 hla1898
1325Hmu2121 1964 902 987
1369Hut1022 902 1944 1100
1460hla1898 987 1100 2173 

283 symbols
consensus       ---------------------VYDYHVHTNYSDGAFLFRMADAAEAAGLDGVGFTDHCNV
#oth            1111111111111111111111....1..1....21121.21..12...1.1.11...1.
Hmu2121         ::::::::::::::::::::::::::A:::::::RYM:H::R:::::::A:I::::::T:
Hut1022         :::::::::::::::::::::M:::::::T::::S::P::I::::R::::::::A:::::
hla1898         MTRRAIPADPKLRVDPERTRS::::::::::::::::S::V:::TD:::::::I::::::

consensus       FDADAARAERAAFGFNLDLTYERRRRAIERLRARTDVAI--FDAVEMDYHPAREAAIADF
#oth            2222122221222..1..1......21.111.121.121111.1.....1122.2..11.
Hmu2121         TER:FR:E:::RY::T::E::::::MG::S:::E:::::::Y:G:::::::SD:D:::::
Hut1022         :::E:DQ:Y:E:S:::::::::::::::D:A:E:::LRL:::::::::::A:::E::ES:
hla1898         SPDP::ERFKRT:::::::::::::E:::::::DP::G:DV::::::::D:DH:::::::

consensus       LAEADFDYAIGSVHELDGANVHNRSNFAGRSEPERRALVDRYFDRLVALIDSELFAIAAH
#oth            .21.1.1.......11..1..122.21112112112.1.12.112.12.11....21...
Hmu2121         :S:::::::::::::::::::QVP::YT:::::TLD::::E::::::E::E::::DV:::
Hut1022         :ED:::E:::::::AI::V::::Q:Y:::L::T::E:A:EM:V:H:IS:V:::::E::::
hla1898         ::::G:::::::::::::::::T::H::DKPAS::::::::::EK:::::::::::::::

consensus       PDLVERNPALRGRATEDHYARVADAFADSRTIPEINAGRALDDYGEFHPAAAFASRLVDA
#oth            1..1..112.1.21.111.211.2..2....1.......2.111111..222.212.111
Hmu2121         :::I::T:P:A:::::AQ:R:::S:::::::::::::::::S:LDLV::T:P:R:V:AEY
Hut1022         V::::::E::::LL:::::G:I::::T::::V:::::::V::A::::::SES::EL::::
hla1898         ::::::::H:::F::A::::A::E::R::::::::::::L::::::::::P::L::::::

consensus       GVSVTVGSDSHAPGEIAARADELRAEREEAALDIVALDALA--
#oth            1.1111.1.1.2.121221221111221122.12.21121211
Hmu2121         D::::::::::T:E::E:::PF::SFF::::::L::PP::Q::
Hut1022         :::F:I:::A::::SLIDCSE::::V:::WH:P::E::LV-::
hla1898         ::R:S::T:::E::V::P:I::IE::MDRRG::P:R::K::ED