3 genomes BUD2709 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0265 - Hbo3027 - - - NP4242A -

Pairwise sequence scores
Consensus score	4363	rrnB0265	Hbo3027	NP4242A
4021	rrnB0265	4832	3747	3462
4018	Hbo3027	3747	4342	3511
3757	NP4242A	3462	3511	4398

616 symbols
consensus       --------------------------------------------------------MPNS
#oth            11111111111111111111111111111111111111111111111111111111.221
rrnB0265        MSPECVYLHGCRKRICLRYTQYKYYLRRKPNSNWYNIFCVESNRYSYTGNRYSERC:VT:
Hbo3027         :::::::::::::::::::::::::::::::::::::::::::::::::::::::::S:G
NP4242A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::E:

consensus       HNLPDYDTAREAFSWDDIYAEADWDAPNDLNIAHEVADRHATDRERVALYQVDTDGELTK
#oth            ...1..112112.1....111..1.1.221..1..12....11112......21....11
rrnB0265        ::::::::::QE::::::::D:::::::::::G:::::::::::GQ::::::G:::::S:
Hbo3027         :::V::E:E::::::::::::::::::EK:::::::V:::::::::::::::::::::::
NP4242A         :::::::QLC:S:T::::AD:::G:Y:DSF:::::AC::::DNA:K::::::SE:::::T

consensus       MTFWELADRSSQFANVLDALGVAQGDRVFSYMPRIPEHYVALVGTLKHGAVWGSVNERFG
#oth            11....1........1.12...21...............1..1....1..........1.
rrnB0265        ::::::::::::::::::D:::::::::::::::::::::::::::::::::::::::::
Hbo3027         ::::::::::::::::::R:::E:::::::::::::::::::I:::::::::::::::::
NP4242A         LP::::S::::::::T:E::::DE:::::::::::::::I:::::::R::::::::::Y:

consensus       PDGISYRLDDCDAKVVVTTTDNRETVADALDDAPAVEHVITVDRGGGAPADDVVFNTALD
#oth            ....1...1....1.....11..1..1...11111..........1.1.21..1..11..
rrnB0265        ::::::::::::::::::::N::D::E:::::::::::::::::::::::::::::::::
Hbo3027         ::::A::::::::::::::::::::::::::::::::::::::::::::VE:::::::::
NP4242A         ::::::::N::::Q:::::D::::::::::EEVDS::::::::::S:V:D:::A::DR::

consensus       GASREYEAAETEGEDDALLYYTSGTTGLAKGVLHKQRWVAGVAATQKYAVDLQPGDLYWS
#oth            1..21..1.1.21..1...........1.......1..11......111....1......
rrnB0265        :::TA::V:::S::::::::::::::::::::::::::I::::::::H:::::D::::::
Hbo3027         :::K:::::::G:::N::::::::::::::::::::::::::::::::::::::::::::
NP4242A         E::::::::D::S::::::::::::::P:::::::H:::L::::::R:S:::::::::::

consensus       TGDLGWLTGAINTLGAWFWGASLFTYEGEFDPDEWAALLDEYPISVLFSVPTAYRMLREN
#oth            ....................1..........12...2....1.11..............1
rrnB0265        :::::::::::::::::::::::::::::::T::::::::::::::::::::::::::::
Hbo3027         ::::::::::::::::::::T:::::::::::T:::D::::F:VT::::::::::::::K
NP4242A         ::::::::::::::::::::::::::::::::E:::E:::::::::::::::::::::::

consensus       EDVLADVNLDLRHALSIGEPLSAGVVEWGEENLGVTILDTYGQTETGNMIINNYPTMELR
#oth            ...12.12.....................111.....1.................11.1.
rrnB0265        ::::::::::::::::::::::::::::::DE::::::::::::::::::::::::::::
Hbo3027         ::::D::D:::::::::::::::::::::K::::::::::::::::::::::::::::::
NP4242A         :::FE:TS:::::::::::::::::::::::::::::H:::::::::::::::::SE:V:

consensus       PGSMGKPLPGIEADIVDPDTGEVLPPGETGEIAQRGDYPCFFAEYWNKPEKTAACFVDGP
#oth            ..................11....1.1......1..........1.1..1..121.11.1
rrnB0265        ::::::::::::::::::QS::::E:::::::::::::::::::F::::K::QRA:I:::
Hbo3027         :::::::::::::::::::::::::::::::::E:::::::::::::::::::::::E:D
NP4242A         ::::::::::::::::::::::::::D:::::::::::::::::::Q::::::D::::::

consensus       DGEWYLSGDLAHKDEDGYFWFEGRADDVILSSGYRIGPFEVESSLGEHEAVAEAAVVPKP
#oth            1.1........1................................1...1....2...1..
rrnB0265        ::K:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hbo3027         S::::::::::Y:::::::::::::::::::::::::::::::::::::::::S::::::
NP4242A         ::::::::::::::::::::::::::::::::::::::::::::M:::P::::V:::G::

consensus       HEERGNIVKAYVVPSDGAEPSEELKEDIKNHVKEELSAHEYPREIEFRDELPKTVTGKIR
#oth            .21........1.1.1111.1121....122..111............1...1.......
rrnB0265        ::A:::::::::::::D::::DP:::::QSY:::::::::::::::::E:::::::::::
Hbo3027         :P:::::::::::L:E:T::::S:::::::K::SD:::::::::::::::::::::::::
NP4242A         :K:::::::::A::::::D:T::T:::::T:::::M::::::::::::::::T:::::::

consensus       RTELRDEAEAEAEIDS
#oth            ....2.1.12.11221
rrnB0265        ::::H:D::::::VE:
Hbo3027         ::::Q::::N:T:TS:
NP4242A         ::::::::QE::D::A