3 genomes BUD2712 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnB0171 - Hbo3661 - - - NP1840A -

Pairwise sequence scores
Consensus score	2101	NP1840A	rrnB0171	Hbo3661
1040	NP1840A	2305	524	629
1419	rrnB0171	524	2108	1205
1565	Hbo3661	629	1205	2085

317 symbols
consensus       MSNTSTSPT-----------------------PGPDLLAERSLGGILVHLLAIPTGVVGA
#oth            12211111111111111111111111111111...21.2..111..11.1.211.111.1
NP1840A         ::::HD:::DPQPNSAGGSQPTPPTDPAEQTP::::I::::T:S::F::::GLL:FFI:P
rrnB0171        --M:::P::::::::::::::::::::::::::::K::E::::::::I:F::::::::::
Hbo3661         :TSA:::IA::::::::::::::::::::::::::E::N:::I::::::::S::::::::

consensus       GIVYLAATNEFTKRNARNALDWHLAVLAATVGTFGSVFTFAELTGQGITADAILPDPVAA
#oth            121.12.121..11.....11.1.21.121121.1111121111.112122221121122
NP1840A         LV::A::DHD::RE:::::AN:Q:FY:::I::V::-------ML:VTFA:::L:::::--
rrnB0171        :LL::L::D:::::::::::::::T::LI:AV:::::::Y:::::::V:DVS:F:SS:ST
Hbo3661         :::::V::::::::::::::::::::::L::L::S::::::::::::::NGIT:SE:I::

consensus       GAGIVISALFLLWLAVTACTFAVG----------LIAMGKAIFGDAWRYPIAPALVERFE
#oth            2222121111211211122..21.111111111111.21.....2..1..2211111.12
NP1840A         --------V:V:L:::FVG::GI:IGILLNIGFV:V:S::::::H::T:::::SFFD:R:
rrnB0171        V::::T:::LM::F::::W:::::::::::::::::::V:::::T:::::FSL::::::G
Hbo3661         :GSF:::::::V:MII:T:::L::::::::::::F::T::::::::::::LT:::::::S

consensus       SQGNLNDRWPIVILGYAVAAPLLI----WAVFADPANAAALFAGVFGLLGLILVLTPLTG
#oth            12221222.121121.2.22.1111111121.2212221221221.1.111111.111.1
NP1840A         AV:GD:IP:WTLLSV::::T:P:FATLA:EA:::GPD:DP::W:::A::AVVF::SFV:F
rrnB0171        :HI::S::::L:::::I:LS::::::::::::FV:::D:IVILSA::::::::G::::::
Hbo3661         ::VE:PGG:::::V::V:F:::V:::::GG::LG:HEG::F::T::::F:::::::::::

consensus       AAMYRHAKAARQADAAWQPHPAAYIGAPVLVAAAAYAVSGAFTDSISPAGDAMYVFLAAF
#oth            211.212122222122121122112.1.1111222.21121112.11.2...1.111.11
NP1840A         :LL:KDIE:V:G:EHG:M:D:RL:L::::ASGI:T:P:A-:VAG::::::::V:GYM:VL
rrnB0171        I:::::G:EHWLQ::DQ:S:VF:HV:L:I::::IG:V::WS::Q:V::Q:::::::::::
Hbo3661         V:::L:::R:S:T:T::E::T:::::::::::VL:::L::::::::N:G:::::::::::

consensus       WVASIVYLVRWRTAHSR
#oth            .12111.11.1112212
NP1840A         :::AV:::::-:VS:G:
rrnB0171        :IS:::::I::W:TS:E
Hbo3661         ::T::A:V::::::L:-