3 genomes BUD2730 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1395 - - Hmu1903 Hmu1904 - - NP4160A -

Pairwise sequence scores
Consensus score	2166	NP4160A	rrnAC1395	Hmu1904	Hmu1903
1016	NP4160A	2133	664	683	633
1421	rrnAC1395	664	2723	972	944
1400	Hmu1904	683	972	2174	957
1343	Hmu1903	633	944	957	2210

357 symbols
consensus       ------------------------------------------------------------
#oth            111111111111111111111111111111111111111111111111111111111111
NP4160A         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
rrnAC1395       MSVLTVCGHIFFSYWQDLSTGWIVSVEPTDRPTAGDRPQKTATLWPGIGQVLFAHHGEST
Hmu1904         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Hmu1903         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::

consensus       MEWRCEWCGKPHEENDPP--CDNCGHNSFERAVEQVNEEDEDG--GPVWACTDCGRQHQK
#oth            .2...1...1111211..11.12..132..212212122333221211.1.21.1.1.2.
NP4160A         :Q:::::::RNY:SDE::AT:ET::RE:::ADTDDDPF:S:--::QI::::A::::E:V:
rrnAC1395       :K::::::::::::::::::::::::G:::E::T:::::VVE:::::R:V:L::::::::
Hmu1904         :::::T:::::::::::::::::::::T::::::::PTAET::TTD:::V::E:::::T:
Hmu1903         :::::T::::::DAD:::::::E:::HK::::I::L::S:GQDH::::::::E:D:E:::

consensus       NSPPCKRCGNANLERR--QPDDDDLDDLGGTGYLDVLEPKYVAGYAAVAVLVGLLVLAAV
#oth            1....2...1321.21112133.311122211221.1112.22.11311.121322.132
NP4160A         H::::A:::GH::::Q::RVTV:VDE:VSAP:::S:GA:-:LL:ALV:V:I::---::L:
rrnAC1395       :::::::::GS:F:::VGP:E::P:::IQ-::W:::::T:::I::::::::L::I:::::
Hmu1904         ::::::::::VD::Q::::::W::::E::::S:R:::::R::::::IA:::GIT::::YA
Hmu1903         H::::S:::::Q::K:::::QY:E:::::::SFV:::::::A:::LL::::::S:A:GVT

consensus       GVITLPGL------GRPPAP-DAAGDGDRVGSLSIAAVEAAYVDRLNDRRDAEGVGAVS-
#oth            .2111.1311111113.1322121132122222.113..1212132131.2221223211
NP4160A         :::PV:::::::::SG::::P::PA:EE:TA:::L:E:::NLH::FETE::S:::QSRTL
rrnAC1395       :G:::::FAAETPA:P::IA:SP::S::T:N:F:::D::DT:L:VY:V::SGV:G:T:::
Hmu1904         ::V::::M::::::::::V:D:V::E:::::DR::::::::::EQ::E::::A:::PLT:
Hmu1903         :L::V:FV:::::::S:---:::P:HAESY:N::LDS::D:::EE:::::T::DAS::::

consensus       RGADLDDAAAYYNKRTVASRYDDARDPTQRDAVSAFDIRCNRPVTEAPAAASDETAQNAD
#oth            3222222221121132.3221111322232132131.33.3222233131233213333.
NP4160A         D:G:TGAFVT:LTRH:::E::::GY:GDGP:P-:::::::Q:Q----::VGVF:::VD::
rrnAC1395       :N:TI:::::::::GR:DA:::N:ER::-:EG::R::LP:E:::VVSYEV:Y:R:P:SL:
Hmu1904         NDT::EWYT::V:::::Q:VAG:G:QLR:EERN:V::Y-:DD::::RYI::----ETTV:
Hmu1903         S::A::::::A:::QW:R:E:G::D:::P::::NQH:PN::SEI:F::H:T:S::VE:F:

consensus       AFQNESALARALADSMLGRDN--RALRADADSIGVDIHVAPDERVFVTYAVC-----
#oth            21211211.32.322312331113222223322.211..1..111..1132.11111
NP4160A         ::NS:::::DE::TA::DVTEYRS:I:N::QRE:ISV:::::GT:::G:LS::::::
rrnAC1395       Q::::T:::T::V::Y:E:G::::IQ:::TGLV:L::::G:::::::::VL::::::
Hmu1904         ::DSDAS::E::L::WD:N:E::-::T:TQE:::::V::G::G:::::V::::::::
Hmu1903         -V:::::V::G:QIFT::DP:::EL:EERY::::::::::::::I:::VF::NGGAF