3 genomes BUD2733 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC2723 - - Hmu3035 - - NP0458A -

Pairwise sequence scores
Consensus score	1680	NP0458A	rrnAC2723	Hmu3035
1090	NP0458A	1912	822	835
1330	rrnAC2723	822	1690	1110
1337	Hmu3035	835	1110	1641

259 symbols
consensus       --MSLLPSRDPASPDADPRVIGVDSDDADDVLSALSAETARRLLAELHEEPAPPGELADR
#oth            11......211121.11...111..11..1111...11...2..1..111....1...1.
NP0458A         ::::::::SPDV:::G::::V:L::EE::ELMA:::S::::::::::::D::::::::E:
rrnAC2723       MI::::::::::T:::E::::::::::::::::::::::::N::S::NK:::::S:::::
Hmu3035         ::::::::K:::VT:::::::S:::::::::::::::A:::K::::::::::::::::::

consensus       VDTSLQNAQYHLEKLENAGAVEVVDTAYSEKGREMDVYAPADQPLVICAGDEQETSGLRA
#oth            .......1....1..12...1..11..........1.11..11....1..1.111....1
NP0458A         :::::::T::::::::D:::I:::G::::::::::S::G:::S::::F::E:ERA:::::
rrnAC2723       ::::::::::::K::K:::::::::::::::::::::F:::N::::::::::::::::::
Hmu3035         ::::::::::::::::T::::::A:::::::::::::::::::::::::::::::::::S

consensus       AVARLIGGVAAIGAASLLVQQLFGR---SLLAG-----------PTVQEGSADTGDPG--
#oth            .12212..1122122112..111.21111..2.111111111111112211121121111
NP0458A         ::S::F:::L:LA:GGAV::::::E:::Q::::TDEAAEPPEPT::PEPEEPEED:::AF
rrnAC2723       :L:NI:::L:I::F:::::::V::SGVG:::G:::::::::::::::SS::::::TRD::
Hmu3035         ::TS:L::::VV:VL::F::E:L::::::::-::::::::::::SG::::::G::Q::::

consensus       ---PSFLPEASAGNTTEEAGDFAADAGAEATAAQDGAQAA-----AAAIPPGAAFFAGGA
#oth            1111122.222212111221222.21122212.12.12..111111112...2...1..2
NP0458A         DVE:EPT:::TPEP:P::VA:TP:P:PE::PD:A::LS::IEGLF::GL:::L:::L::F
rrnAC2723       ::::::Y:----::::VTD:G:E:T:::LD::::G::E::::::::::::::V:::::::
Hmu3035         :::S:Y::SG:::SV::S::QV:::G:---:V::S::::::::::VN:V::::::::::C

consensus       VVLLGVAAAWYLRQ-----
#oth            1.11112121121111111
NP0458A         ::::A:VGTT::::RRTHR
rrnAC2723       F:IA:M::L::M:::::::
Hmu3035         ::::::F:::HFGR:::::