3 genomes BUD2743 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3149 - - Hmu2602 - - NP5028A -

Pairwise sequence scores
Consensus score	2839	rrnAC3149	Hmu2602	NP5028A
1713	rrnAC3149	2741	1129	962
1913	Hmu2602	1129	2856	1161
1768	NP5028A	962	1161	2861

404 symbols
consensus       --MRCRVR-ALHCALLLALLAAPAAATAAATDDIDAQQT-PATAAPDAENTTFAAQLQSD
#oth            11.22.121112211.1211111211122222222111111211212.12.1122.1111
rrnAC3149       :::TP::SG::LLLV:F::::T:PL:::::::::P:::::TG:P::V:::::::L:I::N
Hmu2602         VK:SH:L:::A:F::::VV:S::V:::SGVVGGV:::::P:P::SST:SH::ILI::R::
NP5028A         :::::::P:V:V:::::C:V::G::--------------:::L:Q::::E:H:E::::D:

consensus       GDAEWTITAS-FALANETERNRFRDTAEAFAEGRAD-DLGLGAFRRAAAEASRATGREME
#oth            .1.2111121122221.11122.2211.2.211221122112..11.211.12111.1.1
rrnAC3149       :::K::::DT:Y::-E:::TEW::::G:Q:::EDGE:GVW:P:::E:KD:::TV::::::
Hmu2602         :N:TFSV:::G:DV:::Q:::S:KT:::R:T::E:::T:::S:::::N:A::E::::P::
NP5028A         :::::::AV::VPFT:::D:D::DSF::::EA::E:L:P:H:::Q::::::E::AD:::A

consensus       ITDVRRRSAISNRE-----GQLRLEFTWTNFARIDDE-TRYVDDAFNTTDGPWLGGLEAD
#oth            21111.2122222211111.2.212.1.11..122111121.1.11.1.111.121.11.
rrnAC3149       ::::E::YEV:D:K::::::::I:::::::::VVT:::NIV:G::::S:::T:F:T:T::
Hmu2602         LR::::S:NLT:--::::::T:T:S::::::::SEG::::::::VY::::-:::T:::::
NP5028A         V:AP::D:::VED:NGTEY:E::VT:V:ES::::::NG:L:::::::::N::::P:::D:

consensus       QRLVIAAPPGY-GIRTAPIAVRDGDLVWEGPRTFEPGYLEIVYT----GEQNDQSSPGEA
#oth            .211122.1.11.2212.22121.2111..12..21111221.1111112222211.121
rrnAC3149       ::F::SP:S::::VES::S::D::K::F::Q::::::::SV::::::::::P:TRT:T::
Hmu2602         :T::LEL:::A:::::V:KQ::::QI:::::T::TESE::LA::PGAE:PS:SP::::GG
NP5028A         :S:T:::::::A:PT:S::GAEE:::H::::E::G:::FT:::-::::----P:::::P:

consensus       PDGDFDGISSAL-WGGLALLGAAVAALGLYLLLARDDPPIDRRA-DAGPEATAENDDGDD
#oth            .12222.1112111.112.21121212.2.2122122222212211111221222111.2
rrnAC3149       :ESI:S::G::W:I::VI:MVLL:G:V:-:MFKTGYT-------:::L:SVG::::::::
Hmu2602         ::::P::G::L:::::::::::V:::S:V:V::L:::SV:::D:F::::L::ESE::::E
NP5028A         ::---V:::TM:L::A:L:S:::L-L::::::V::HW::TG::S:GS:S:E:PPDASA:S

consensus       PPATAARAAPTETD------EAADDEIDEELLSDEERVERLLERNGGRMKQANIVKETGW
#oth            1121212.2112111111111221111.2..........2...2........1..1....
rrnAC3149       STG:::::SD:G:S::::::----:DV:V::::::::::::::E::::::::R::S::::
Hmu2602         ::::VPT:::A:::::::::::P:Q::::::::::::::L::::::::::::::::::::
NP5028A         ::PGG:S:E::SD:AAGSDA:T::::::M::::::::::Y:::Q::::::::::::::::

consensus       SNAKVSQLLSSMAEEGRIDKLRIGRENLISFPNEDITDIDN---
#oth            ............211111............1.2.111.112111
rrnAC3149       ::::::::::::D:::::::::::::::::::::::::F:E:::
Hmu2602         ::::::::::::E:D:Q:::::::::::::::D::V:::E::::
NP5028A         :::::::::::::D:D:V::::::::::::L:G:G:D:::TNDK