3 genomes BUD2819 4 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC3130 HVO_0900 HVO_B0218 - - - - - HQ1618A

Pairwise sequence scores
Consensus score	2313	HVO_B0218	rrnAC3130	HVO_0900	HQ1618A
1199	HVO_B0218	2258	708	1025	1055
1278	rrnAC3130	708	1566	1142	1161
2039	HVO_0900	1025	1142	2348	1986
2070	HQ1618A	1055	1161	1986	2423

340 symbols
consensus       MSLLADVLGILLNGLQQGAIYVLLAVGLSIILGTLKFVNFAHGALYLIGTYAGLLIALNV
#oth            122232133212221222221212111111221211211211121123121211221232
HVO_B0218       -MNVDG:V:F:FIA:SVASL:L:V::::::VF:S::Y::M:::V:::S:A:I:::::SSE
rrnAC3130       ------------------------------------------------------------
HVO_0900        ::::S:::V::::::::::::::::::::::::::::::::::::::V::::::FV::::
HQ1618A         :::::::MI:::::::::::::::::::::::::::::::::::::V:::::::::::D:

consensus       QL-NGKLAEWGFSQIGLDIGFLAALVFVPIVVFGVGVAMERFIAQAFYDRPDTDQILVTF
#oth            32231213221113311131132112221322132123...21.22..1.111..1....
HVO_B0218       :Y:G:L:SDF:--:V:::W::VP:::LT:V:I:V:::::::W::KP::E:ELL::L::::
rrnAC3130       --:-----------------------------------::::::::::::::::::::::
HVO_0900        P:S::::::::::SF::::::::::L:::LF:::::LL:::YL:R:::::::::::::::
HQ1618A         S:TS:::R:::::T::::L::F:::::::::::II::T::::L::S::::::::::::::

consensus       GIAIVVQELFRVLFGSNSLPFPQPEWAL--G-F-GIPVSGPIALPIIGNFP------RWR
#oth            .11.21...212.1.22121121.123122121211111.1.2..11.21.11111121.
HVO_B0218       ::L:AA:::VAI:::RTGTIY:R:::L-::-:-:----T:A:S::V::TP:GMSAASTI:
rrnAC3130       :L::I::::L:A:L:GS:Q:::::S::-::-:-:----:::::::VV:::::::::::::
HVO_0900        :L:::::::::::::::::::E:::RI:SV:S:A::::::::::::V::::::::::Q::
HQ1618A         :::::::::::::::::::::N:::NV:AI:G:G::::::::T:::::G:::::::::::

consensus       LWVIAITAVLVAGVYALVEYTDFGLIVRAGTRDAEMVRLLGIKIDRPYLVVFGIGAALAG
#oth            12.111.11..22111111...1..2.1...2.2..111..1113..1111.11...1..
HVO_B0218       VL:V:L:LL::::IF:FFK:::Y::A:::::E:S::TQM:::R:G::F:LI:AV:::Y::
rrnAC3130       :G:::::::::L:::::::::::::::Q:::L:G:::::::::LS:::::::::::::::
HVO_0900        ::::G:::::::L::L:::::::::V::::::::::::::::::T:::I:::::::::::
HQ1618A         :::::::::::GI::::::::::::::::::::::::::::V::::::::::::::::::

consensus       VAGVVGGPLANVNPTIGTNILVPAFLTVVIGGVGSIAGAVVGGLLAGLTQAALI------
#oth            1...1..1.31.1121.11111.1111.11..1.113.1.211123.1221312111111
HVO_B0218       L:::L::S:F::TSE::ME:II:SLVI:IM:::::LR:T:::A::::::F:VAT::::::
rrnAC3130       ::::::::::::::N:::EQ::::::::::::::K:E:::IA::ML:TL:VL::::::::
HVO_0900        :::::::::NV::::::::::::::::::::::::::::::::IVF:::T:::V::::::
HQ1618A         :::::::::SV::::V::::::::::::::::I:::T:::A::::I::V::T::GLPSVT

consensus       ------NFAP-WSQVGIYAIAALVLLIRPQGILGSEEVAP
#oth            1111223221211.111.11.12..13..1.111111222
HVO_B0218       ::::::ELE:SMT:AS::LL:IV::T:::S::FP:A:IGQ
rrnAC3130       ::::QTGY:A:::::::::L::::::V::::L::::VDVS
HVO_0900        ::::::S:::A:::::L:::::I:::T::::L::D:::::
HQ1618A         LGAFTL::S:::::::L:::::::::L:::::::::::::