3 genomes BUD2829 3 proteins a Hsa Halobacterium sp. NRC-1 b Hma Haloarcula marismortui f Hvo Haloferax volcanii g Hbo Halogeometricum borinquense h Hmu Halomicrobium mukohataei i Hut Halorhabdus utahensis j Hla Halorubrum lacusprofundi q Nph Natronomonas pharaonis x Hwa Haloquadratum walsbyi - rrnAC1548 HVO_1741 - - - - - HQ1889A

Pairwise sequence scores
Consensus score	2555	HQ1889A	rrnAC1548	HVO_1741
1168	HQ1889A	2587	969	1000
2228	rrnAC1548	969	2562	1981
2190	HVO_1741	1000	1981	2564

344 symbols
consensus       MPHECDACGESFNTLSRLRLHDCPADEPADRNPLSSFDAFLDSISDALDADMQRRNRERE
#oth            .1....1...1.2..1.......11211122211111.211111.121111121112111
HQ1889A         :A::::D::::::::T:::::::G-------------:VQSETF:TSSEPNRSDSGYSSP
rrnAC1548       ::::::::::T:D::::::::::::::::::D::::::::::::::G:::::::::::::
HVO_1741        ::::::::::::T::::::::::::E:::ES:::::::S:::::::::::::E:::Q:::

consensus       TRGLNAASATLKTNLEAAANGDADAAFQAIARYERELREYRDAEND-DTYRGIFWAFYEP
#oth            12112.1121.112.12112..2..11222121.11.21122211211...11..111.1
HQ1889A         :EER::SV:E:DNL:DRFS:::I::LHY:VVEF:SA:SAALEED:SG::::DV::PYH:R
rrnAC1548       :Q::D:::D::::S::E::Q::V::::GL:::::::::::::::DY:K::::::::::::
HVO_1741        K:::E:::G::::::::::K::::::::ML:H:::::Q::HQT:::::::::::::::::

consensus       AAEALDEIAQREGWAFLADLIDAYDRESDDEEPNVSPVIENAVGRHVIRTRLRDGVAAVP
#oth            2111...1.22...2..21111.121111.12.2.1.111......11...11...2.11
HQ1889A         VSD::::A::S:::S::::VTK:H:PAQ:::I:L:T:AVA::::::L:::::T:::K:IS
rrnAC1548       T::T:::::IH::::::RE:::::P:::T:D:::::::::::::::::::::::::::::
HVO_1741        :::::::::T::::P::T::::::S::::::-:F:::::::::::::V:::R::::G:::

consensus       VEALAYLGSF---WDSNADTSREESFTYGWGIGHPEHSVADRLQAAATEELFWVRGVLPH
#oth            11..1..111111121221112..111.....11.1...212112221.11.1.111.1.
HQ1889A         :A::E::DAIAVNAPDT::SA:::VHA:::::D::A:::T:::H:RTS:DI:S:NPT:E:
rrnAC1548       ::::::::::::::E:MGE::G:::::::::::::::::::HA:EV::::::::::::::
HVO_1741        A::::::::::::::::K:::W:::::::::::Y:::::EEQ::D:V:::::::::::::

consensus       AFYADQDAAADLLNALLRDERID-------YED----RYLLASILAEVDRDSAPQIPRYW
#oth            1.....2..1..121.12..1..111111111.1111....111122111.12122...1
HQ1889A         ::::::Y::V:::EE:V:::S::GTLPRVTRD:MPYR::::DCVYGLKTD:HW:GM:::Y
rrnAC1548       T::::::::::::::::T::::::::::::::::::::::::::::T:::::SL::::::
HVO_1741        ::::::H:::::MD:::S:::::::::::::::::::::::::::S::::::::KV::::

consensus       DHREELDDRFEFDETVRSRLRETIEAEGFHRRLGEDWTFADMDV
#oth            1211.1111..1..1.1111.111.21..112.111...2.121
HQ1889A         NWH::F:YT::L::::EQ:I::LV:ET::GAD:PN::::R:LG:
rrnAC1548       ::::::::::::::A::::::::::::::::::::::::S::E:
HVO_1741        :M:D::N:::::::::::Q::N:::S:::::Q:::E:::::::L